View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4112_low_12 (Length: 251)
Name: NF4112_low_12
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_12 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 41078046 - 41077833
Alignment:
| Q |
38 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41078046 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
41077947 |
T |
|
| Q |
138 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41077946 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
41077847 |
T |
|
| Q |
238 |
gcaaaatggaatta |
251 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41077846 |
gcaaaatggaatta |
41077833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 1217228 - 1217178
Alignment:
| Q |
80 |
catagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
1217228 |
catagaatcaattaaagcatagcataataaaattcaagcacacatctcatg |
1217178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 4132034 - 4132091
Alignment:
| Q |
73 |
atgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
130 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
4132034 |
atgataacatagaatcgattaaagcatagcacaatacaattcaagcacatatctcatg |
4132091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University