View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_low_14 (Length: 250)
Name: NF4112_low_14
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 50379611 - 50379375
Alignment:
| Q |
1 |
agccacaaaagctgtaacgatgtttcagtcactggcgcgtagccacggtgctgtgttaaatgacaatgttgaagttgtagacataaaaaacgatggtggt |
100 |
Q |
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| T |
50379611 |
agccacaaaagctgtaacgatgtttcagtcactggcgcgtagccacggtgctgtgttaaacgacaatgttgaagttgtagacataaaaaacgatggtggt |
50379512 |
T |
|
| Q |
101 |
agcgttgttattttaaccgcgaaaggtgaaaaattccgtggcaaaaaatgtgttgtgacagtgggagcttgggtgaacaagctagtaaagaagataagtg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50379511 |
agcgttgttattttaactgcgaaaggtgaaaaattccgtggcaaaaaatgtgttgtgacagtaggagcttgggtgaacaagctagtaaagaagataagtg |
50379412 |
T |
|
| Q |
201 |
gggttgaaattccgattcaaccattggaaactcacct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50379411 |
gggttgaaattccgattcaaccattggaaactcacct |
50379375 |
T |
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