View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4112_low_2 (Length: 603)

Name: NF4112_low_2
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4112_low_2
NF4112_low_2
[»] chr7 (5 HSPs)
chr7 (17-598)||(36126850-36127428)
chr7 (126-228)||(27571822-27571922)
chr7 (237-283)||(15050181-15050226)
chr7 (125-178)||(30182320-30182373)
chr7 (182-218)||(40422762-40422798)
[»] chr4 (4 HSPs)
chr4 (135-232)||(18596995-18597091)
chr4 (125-173)||(2206367-2206415)
chr4 (134-228)||(8330075-8330168)
chr4 (125-213)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (125-218)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (125-213)||(2234490-2234576)
chr6 (125-179)||(30926802-30926856)
chr6 (125-179)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (125-178)||(3515826-3515879)
chr1 (237-278)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (125-228)||(35058321-35058422)
chr3 (125-179)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (241-280)||(14268-14307)
[»] chr8 (3 HSPs)
chr8 (134-232)||(32056320-32056416)
chr8 (239-284)||(30251625-30251670)
chr8 (237-285)||(35495146-35495194)
[»] chr5 (2 HSPs)
chr5 (237-278)||(15368136-15368177)
chr5 (183-228)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 598
Target Start/End: Complemental strand, 36127428 - 36126850
Alignment:
Q  17 cacttttcctttctcttcactcttccatgactacaactacaaccttagtgcttgtttgattctgctttgacaaaaattgacagttgaaaataaagtgatt 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127428 cactttacctttctcttcactcttccatgactacaactacaaccttagtgcttgtttgattctgctttgacaaaaattgacagttgaaaataaagtgatt 36127329  T
Q  117 tatggtagtttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttga 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36127328 tatggtagtttgagtgctaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttaggaatcaattcttgatgcaaaatcaattttacttga 36127229  T
Q  217 gaccaatcaaacttgtttccagaatcaattttggctcttcctgaagtggaaccaaacatacacttagaagcttctgactcaattttagcttaaacaatac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127228 gaccaatcaaacttgtttccagaatcaattttggctcttcctgaagtggaaccaaacatacacttagaagcttctgactcaattttagcttaaacaatac 36127129  T
Q  317 a--------------attgtattttcatatttgataggagttgacacaacgaggttcaattgaacactgtaacttagttttcagctggatgaagaatcag 402  Q
    |              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127128 aattaatcattgtgcattgtattttcatatttgataggagttgacacaacgaggttcaattgaacactgtaacttagttttcagctggatgaagaatcag 36127029  T
Q  403 aaaaattattgtgccagaacagatatgtacaacatgatgattaggttgcatgctaggcataatagaacggatcaggcacgtggtttgttttttgagatgc 502  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127028 aaaaattattgtgccagaacagatatatacaacatgatgattaggttgcatgctaggcataatagaacggatcaggcacgtggtttgttttttgagatgc 36126929  T
Q  503 aaaaatgcaggtatggtatgactggtgaaggttttagttttgcgaaggtttagttatttaatcgttgttagtaattgtgtgtgtgtctgtgctgct 598  Q
    ||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36126928 aaaaatgcaggtatggtatgactggt-----------------gaaggtttagttatttaatcgttgttagtaattgtgtgtgtgtctgtgttgct 36126850  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 27571922 - 27571822
Alignment:
Q  126 ttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatca 225  Q
    |||||||  ||||||||||||||||| |||| || |||||| || ||| |||| |  ||||||||||||| | |||||||||| |||| |||| ||||||    
T  27571922 ttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtag--aatcaattcttgaggtaaaatcaattatactcgagagcaatca 27571825  T
Q  226 aac 228  Q
    |||    
T  27571824 aac 27571822  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 15050226 - 15050181
Alignment:
Q  237 agaatcaattttggctcttcctgaagtggaaccaaacatacacttag 283  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  15050226 agaatcaattttggctcctcca-aagtggaaccaaacatacacttag 15050181  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 30182320 - 30182373
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 178  Q
    |||||||| |||||| ||||||||||| |||| || ||||||||||||| ||||    
T  30182320 tttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagt 30182373  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 40422798 - 40422762
Alignment:
Q  182 gaatcaattcttgatgcaaaatcaattttacttgaga 218  Q
    |||||||||||||| |||||||||||| |||||||||    
T  40422798 gaatcaattcttgaggcaaaatcaattctacttgaga 40422762  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 18597091 - 18596995
Alignment:
Q  135 aaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 232  Q
    |||||||||| |||||| ||||  ||||| || |||||| ||||| | |||||||||| || | ||||||||||||||||||||  ||||||||||||    
T  18597091 aaaatcaattatagaatcaaaaggttcaaattatagcttcaagttag-aatcaattctggaggtaaaatcaattttacttgagagaaatcaaacttgt 18596995  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 2206367 - 2206415
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagctt 173  Q
    ||||||||||||||||||| ||||||| |||| || |||||||||||||    
T  2206367 tttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagctt 2206415  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 8330168 - 8330075
Alignment:
Q  134 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 228  Q
    ||||||||||| |||||| |||| || |||||| |||||| |||||  ||||| ||| | || ||| |||||||||||||||||| ||| |||||    
T  8330168 aaaaatcaattatagaatcaaaagctccaatttctagcttcaagtt-agaatccattatggaggcagaatcaattttacttgagagcaaccaaac 8330075  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 32818394 - 32818480
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 213  Q
    |||| |||||||||||||||||||||| |||| || ||| || |||||| || |   ||||||||||| || |||||||||||| ||||    
T  32818394 tttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaat--agaatcaattctggaggcaaaatcaattctact 32818480  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 3476453 - 3476545
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgaga 218  Q
    ||||| || |||||| ||||||||||| |||| ||  |||||||||||| ||||| | |||||||||| || ||||||||||||||||| ||||    
T  3476453 tttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttag-aatcaattctggaggcaaaatcaattttactcgaga 3476545  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 2234576 - 2234490
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 213  Q
    ||||||||  ||||||||||||||||| |||| ||||| |||||||||| |||||  ||||||||| |  | |||||||||||| ||||    
T  2234576 tttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagtt--gaatcaattttgaaggcaaaatcaattctact 2234490  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 30926802 - 30926856
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 179  Q
    |||||||| |||||||||||||||||| |||| || |||||| |||||| |||||    
T  30926802 tttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagtt 30926856  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 31305871 - 31305925
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 179  Q
    |||||||| | |||||||||||||||| |||| || ||||||||||||| |||||    
T  31305871 tttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagtt 31305925  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 3515879 - 3515826
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 178  Q
    |||||||| ||||||||||||||||||||||| || |||||| |||||| ||||    
T  3515879 tttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagt 3515826  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 8130892 - 8130851
Alignment:
Q  237 agaatcaattttggctcttcctgaagtggaaccaaacataca 278  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  8130892 agaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 35058422 - 35058321
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatc 224  Q
    ||||||||  ||||||||||||||||| |||| ||  ||||| |||||  |||| |  ||||||||||||| |||||||||||| |||| |||| | |||    
T  35058422 tttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtag--aatcaattcttgaggcaaaatcaattctactcgagagccatc 35058325  T
Q  225 aaac 228  Q
    ||||    
T  35058324 aaac 35058321  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 51285631 - 51285577
Alignment:
Q  125 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 179  Q
    ||||||||||||||||||||||||||| |||| ||   ||||||||||| |||||    
T  51285631 tttgagtgcaaaaatcaattctagaatcaaaagctgtgatttttagcttcaagtt 51285577  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 14268 - 14307
Alignment:
Q  241 tcaattttggctcttcctgaagtggaaccaaacatacact 280  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  14268 tcaattttggctcttccaaaagtggaaccaaacatacact 14307  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 32056416 - 32056320
Alignment:
Q  134 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 232  Q
    |||||||||||||||||| | || || |||||| |||||||||||| | |||||||| | || | |||||||||||||||  ||| ||| |||||||||    
T  32056416 aaaaatcaattctagaat-agaagctccaatttctagcttaaagttag-aatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgt 32056320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 30251670 - 30251625
Alignment:
Q  239 aatcaattttggctcttcctgaagtggaaccaaacatacacttaga 284  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||    
T  30251670 aatcaattttggctcctccaaatgtggaaccaaacatacacttaga 30251625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 35495194 - 35495146
Alignment:
Q  237 agaatcaattttggctcttcctgaagtggaaccaaacatacacttagaa 285  Q
    |||||||||||||| |  |||  ||||||||||||||||||||||||||    
T  35495194 agaatcaattttgggtgctccaaaagtggaaccaaacatacacttagaa 35495146  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 15368177 - 15368136
Alignment:
Q  237 agaatcaattttggctcttcctgaagtggaaccaaacataca 278  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  15368177 agaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 29922631 - 29922586
Alignment:
Q  183 aatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 228  Q
    ||||||||||||| |||||||||||| |||| |||| |||||||||    
T  29922631 aatcaattcttgaggcaaaatcaattctactagagaacaatcaaac 29922586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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