View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_low_20 (Length: 233)
Name: NF4112_low_20
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 8836485 - 8836696
Alignment:
| Q |
7 |
atgaacacaaaagaagaatacaaggttgataatcatatcatttgattactataaacgaaatgtaatcgtattatatgattgattcatttgtacataagta |
106 |
Q |
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| T |
8836485 |
atgaacacaaaagaagaatacaaggttgataatcatatcatttgattactataaacgagatgtaatcgtattatatgattgattcatttgtacacaagta |
8836584 |
T |
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| Q |
107 |
ccaaccatggttgaaaatctggcttggtatttggccacaaaaagaggagaatacaagttcaaactttattaaaaaggatttacttgagaggttgtaaata |
206 |
Q |
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| T |
8836585 |
ccaaccatggttgaaaatctggcttggtatttggccacaaaaagaggagaatacaagttcaaactttattaaaaaggatttacttgagaggttgtaaata |
8836684 |
T |
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| Q |
207 |
atatatataatt |
218 |
Q |
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| T |
8836685 |
atatatataatt |
8836696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 8839385 - 8839484
Alignment:
| Q |
15 |
aaaagaagaatacaaggttgataatcatatcatttgattactataaacgaaat-gtaatcgtattatatgattgattcatttgtacataagtaccaacca |
113 |
Q |
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| T |
8839385 |
aaaagaagaatacaaggttgaaaatcatatcatttgattattataaacacaatattaatcatattatatgattgattcatttgtacatatgtaccaacca |
8839484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 8839551 - 8839608
Alignment:
| Q |
147 |
aaagaggagaatacaagttcaaactttattaaaaaggatttacttgagaggttgtaaat |
205 |
Q |
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| T |
8839551 |
aaagaggagaatacaagttcaatatttagtaaaaaaga-ttacttgagaggttgtaaat |
8839608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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