View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4112_low_21 (Length: 211)

Name: NF4112_low_21
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4112_low_21
NF4112_low_21
[»] chr5 (12 HSPs)
chr5 (19-139)||(39525640-39525760)
chr5 (1-91)||(6706258-6706348)
chr5 (8-89)||(28976686-28976767)
chr5 (1-89)||(35924653-35924740)
chr5 (35-76)||(10818875-10818916)
chr5 (1-89)||(14613536-14613624)
chr5 (36-83)||(8367146-8367193)
chr5 (36-77)||(4192001-4192042)
chr5 (13-73)||(10507657-10507717)
chr5 (50-89)||(35757980-35758019)
chr5 (35-76)||(8367030-8367071)
chr5 (34-70)||(20221226-20221262)
[»] chr2 (7 HSPs)
chr2 (1-89)||(37629617-37629704)
chr2 (5-76)||(41324981-41325052)
chr2 (1-78)||(39994519-39994597)
chr2 (1-66)||(37096677-37096742)
chr2 (36-78)||(28564273-28564315)
chr2 (36-89)||(24145212-24145265)
chr2 (36-76)||(22536990-22537030)
[»] chr4 (16 HSPs)
chr4 (1-89)||(53860773-53860860)
chr4 (1-73)||(4873056-4873128)
chr4 (33-89)||(25812250-25812306)
chr4 (36-92)||(54923066-54923122)
chr4 (1-83)||(51781508-51781589)
chr4 (1-89)||(31775266-31775354)
chr4 (36-76)||(53860895-53860935)
chr4 (44-89)||(54335420-54335465)
chr4 (32-76)||(2605468-2605512)
chr4 (35-67)||(3703693-3703725)
chr4 (35-87)||(4873161-4873213)
chr4 (8-76)||(5979785-5979853)
chr4 (43-87)||(34290731-34290775)
chr4 (36-76)||(21538850-21538890)
chr4 (36-68)||(48292348-48292380)
chr4 (36-76)||(54734331-54734371)
[»] chr3 (4 HSPs)
chr3 (1-74)||(26452802-26452875)
chr3 (14-89)||(26452896-26452971)
chr3 (43-80)||(29722834-29722871)
chr3 (1-77)||(32609372-32609448)
[»] scaffold0110 (2 HSPs)
scaffold0110 (1-89)||(11428-11516)
scaffold0110 (1-89)||(19165-19253)
[»] chr7 (4 HSPs)
chr7 (1-73)||(27866682-27866754)
chr7 (1-95)||(37701236-37701330)
chr7 (42-76)||(48073132-48073166)
chr7 (39-89)||(39933632-39933682)
[»] chr6 (3 HSPs)
chr6 (1-81)||(30015052-30015130)
chr6 (1-89)||(30351432-30351520)
chr6 (34-65)||(9039513-9039544)
[»] chr1 (6 HSPs)
chr1 (36-78)||(8258908-8258950)
chr1 (35-76)||(30018687-30018729)
chr1 (1-76)||(39065315-39065389)
chr1 (36-83)||(47059312-47059359)
chr1 (33-76)||(49632934-49632977)
chr1 (36-76)||(49632849-49632889)
[»] chr8 (2 HSPs)
chr8 (1-71)||(25939302-25939372)
chr8 (35-76)||(9040955-9040996)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 39525640 - 39525760
Alignment:
Q  19 taactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgtcgtgatatttctaacttcttctttcaa 118  Q
    |||||||||||| |||||||||| |||||| ||||| |||||| ||||||||| |||||||||||  ||| ||||||||||| |||||||||| ||||||    
T  39525640 taactatcgatggaatgtttttgatcattttcatgtatttttaagaaacaatgaatgtgagaaaagtaatcgtcgtgatattactaacttcttttttcaa 39525739  T
Q  119 tccaactcactgcggctcttt 139  Q
    |||||||||||||||||||||    
T  39525740 tccaactcactgcggctcttt 39525760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6706348 - 6706258
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgt 91  Q
    |||||||||| ||||||||||||| || || |||||||||||| |||| ||||||||| || ||||||||| |||||||||||||||||||    
T  6706348 ttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgtgagaaaaacaattgt 6706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 28976686 - 28976767
Alignment:
Q  8 tcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||||||||||||||| |  |||||||||| |||||| ||||| ||| || ||||||||||||||||||||| |||||    
T  28976686 tcagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaatt 28976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35924653 - 35924740
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||||  ||||||||||||||| || | ||| |||||| |||||||| ||||| |||||||||||||||||||||||| |||||    
T  35924653 ttataagtcaatggtagttaactatcgctgga-tgtgtttggttatttccatatgtttctaggaaacaatggatgtgagaaaagcaatt 35924740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 10818875 - 10818916
Alignment:
Q  35 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgt 10818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14613624 - 14613536
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||| |||| || | |||||| || || | |||||||||| |||| ||||||||| |||||||||||||||| ||||||| |||||    
T  14613624 ttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaatt 14613536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 8367146 - 8367193
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 83  Q
    ||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  8367146 ttttttgtcatttccatgtgtttttaggaaacaatgtatgtaagaaaa 8367193  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 4192001 - 4192042
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtg 77  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtg 4192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10507657 - 10507717
Alignment:
Q  13 ggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 73  Q
    |||||||||||| || || ||||||||| ||||||||||||| ||||||| ||| ||||||    
T  10507657 ggtagttaactaccgctgaaatgtttttagtcatttccatgtatttttagaaaataatgga 10507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 35758019 - 35757980
Alignment:
Q  50 catgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  35758019 catgtgtttctaggaaacaatggatgtgagaaaagcaatt 35757980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 8367071 - 8367030
Alignment:
Q  35 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgt 8367030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 20221226 - 20221262
Alignment:
Q  34 tgtttttggtcatttccatgtgtttttaggaaacaat 70  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20221226 tgtttttggttatttctatgtgtttttaggaaacaat 20221262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37629617 - 37629704
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||  |||||| |||| |||||    
T  37629617 ttataagtcagcggtagttaactatcgatg-aatgtttttggtcatttccatgtgtttttaagaagcaataaatgtgaaaaaagcaatt 37629704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 41324981 - 41325052
Alignment:
Q  5 aagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||| | |||||||||| |  || |||||||||||| |||||||||||||| || ||||||||||||||    
T  41324981 aagtcagtgatagttaactaccattgaaatgtttttggttatttccatgtgtttctaagaaacaatggatgt 41325052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39994519 - 39994597
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttgg-tcatttccatgtgtttttaggaaacaatggatgtga 78  Q
    |||||||||| |||||||||||| | | || ||| ||||||| |||||||||||||||| ||| ||||||||| |||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatgggtgtga 39994597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37096677 - 37096742
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaa 66  Q
    |||||||||||||||||||||||| || ||  ||||||||| |||| ||||| ||||| |||||||    
T  37096677 ttataagtcagcggtagttaactaccgttgagatgtttttgctcatctccatatgtttctaggaaa 37096742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 28564315 - 28564273
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtga 78  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  28564315 tttttgatcatttccatgtgtttttaggaaacattgaatgtga 28564273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 24145212 - 24145265
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||||||||||||||||| || |||| ||||||||| | || |||||||    
T  24145212 tttttggtcatttccatgtgtttctaagaaataatggatgttaaaacaacaatt 24145265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 22536990 - 22537030
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  22536990 tttttggtcatttccatgtatttctaggaaacgatggatgt 22537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 53860860 - 53860773
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||||||||| |||||||| || || | | ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  53860860 ttataagtcagcggtggttaactaccgttggatt-tttttggtcatttccatgtgtttctaggaaacattggatgtgagaaaagcaatt 53860773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4873128 - 4873056
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 73  Q
    |||||||||||||||||||||||| || || | |||||||| |||||||||||||||||||| ||| ||||||    
T  4873128 ttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatgga 4873056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 25812306 - 25812250
Alignment:
Q  33 atgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  25812306 atgtttttgatcatttccatgtgtttctagaaaacaatggatgtgagaaaaacaatt 25812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 54923066 - 54923122
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgtc 92  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  54923066 tttttggtcatttccatgtgtctctaggaaacaatggatgtgagaaaagcaattgtc 54923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51781589 - 51781508
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 83  Q
    |||||||||||||||| |||||||  | ||  |||||||||| |||||  |||||||||||||||||||||||||| ||||||    
T  51781589 ttataagtcagcggtaattaactactgctgagatgtttttggccattta-atgtgtttttaggaaacaatggatgtaagaaaa 51781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31775354 - 31775266
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||| || ||||||||||| ||| || ||| |||||  ||||||| |||| || ||| |||||||||||||||| ||||||||||    
T  31775354 ttataagttagtggtagttaactttcgttggaatttttttaatcatttctatgtattcttaagaaacaatggatgtgaaaaaaacaatt 31775266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 53860895 - 53860935
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgt 53860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 54335465 - 54335420
Alignment:
Q  44 catttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||    
T  54335465 catttccatgtgtttctaagaaacaatggatgtgagaacaacaatt 54335420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 2605468 - 2605512
Alignment:
Q  32 aatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||    
T  2605468 aatgtttttgatcatttccatgtgtttctaggaaataatggatgt 2605512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 3703693 - 3703725
Alignment:
Q  35 gtttttggtcatttccatgtgtttttaggaaac 67  Q
    |||||||||||||||||||||||||||||||||    
T  3703693 gtttttggtcatttccatgtgtttttaggaaac 3703725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 4873161 - 4873213
Alignment:
Q  35 gtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaa 87  Q
    |||||| ||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  4873161 gtttttagtcattttcatgtgtttttaggaaagaatggatgtcaaaaaaacaa 4873213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 5979785 - 5979853
Alignment:
Q  8 tcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||||||| || ||   ||||||||||||||||||| ||||| || ||||||||| ||||    
T  5979785 tcagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 34290775 - 34290731
Alignment:
Q  43 tcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaa 87  Q
    |||||||||||||||| || ||||||||||||||||||| |||||    
T  34290775 tcatttccatgtgtttctaagaaacaatggatgtgagaacaacaa 34290731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 21538890 - 21538850
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgt 21538850  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 48292380 - 48292348
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaaca 68  Q
    |||||||||||||||||||||| ||||||||||    
T  48292380 tttttggtcatttccatgtgttattaggaaaca 48292348  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 54734371 - 54734331
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  54734371 tttttggtcatttccatgtgtgtttagaaaacattggatgt 54734331  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26452875 - 26452802
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggat 74  Q
    ||||||| ||||||||||||||||| | ||   ||||||||||||||| ||||||||| ||| |||||||||||    
T  26452875 ttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatggat 26452802  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 26452896 - 26452971
Alignment:
Q  14 gtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||||||| | || | | ||||||||||||| ||||||||| ||||||| |||||||||   ||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaatt 26452971  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 29722834 - 29722871
Alignment:
Q  43 tcatttccatgtgtttttaggaaacaatggatgtgaga 80  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  29722834 tcattttcatgtgtttttagaaaacaatggatgtgaga 29722871  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32609448 - 32609372
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtg 77  Q
    |||||||||||||||| |||| ||||  || | |||||||| | |||||||||||||| ||| |||  |||||||||    
T  32609448 ttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaatgatggatgtg 32609372  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11516 - 11428
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||| || |||||||||||  | || ||||||||||||||||| ||| ||||| |||||||||||  |||||| |||| |||||    
T  11516 ttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaatt 11428  T

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Target: scaffold0110; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 19253 - 19165
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    ||||||||| || |||||||||||  | || ||||||||||||||||| ||| ||||| |||||||||||  |||||| |||| |||||    
T  19253 ttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaatt 19165  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27866682 - 27866754
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatgga 73  Q
    ||||||||||||||||||||||||||| |    |||||| |||||||| ||| ||||| ||||||||||||||    
T  27866682 ttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatgga 27866754  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 37701330 - 37701236
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaattgtcgtg 95  Q
    ||||||||||||||||||||||||     | | |||||||| |||||||||| ||||| || |||||||||||||| | ||||||| || |||||    
T  37701330 ttataagtcagcggtagttaactacaaccgaagtgtttttgatcatttccatatgtttctaagaaacaatggatgtcaaaaaaacatttatcgtg 37701236  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 48073132 - 48073166
Alignment:
Q  42 gtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||||||||||||||||||||||||||||||    
T  48073132 gtcatttccatgtgtttttaggaaacaatggatgt 48073166  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 39933632 - 39933682
Alignment:
Q  39 ttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||||| ||||||||| ||| ||| |||||| |||||||||||||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatggaggtgagaaaaacaatt 39933682  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30015130 - 30015052
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaa 81  Q
    ||||||||  |||||||||||||| || ||||  ||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  30015130 ttataagttcgcggtagttaactaccgctgtag-gtttttggtaattttcatgtgtttttaggaaacaat-gatgtgagaa 30015052  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30351520 - 30351432
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaaacaatt 89  Q
    |||||||| ||  ||||||||||| || ||   ||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||    
T  30351520 ttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaatagatgtgagtaaaacaatt 30351432  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 9039513 - 9039544
Alignment:
Q  34 tgtttttggtcatttccatgtgtttttaggaa 65  Q
    ||||||||||||||||||||||||||||||||    
T  9039513 tgtttttggtcatttccatgtgtttttaggaa 9039544  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 8258950 - 8258908
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtga 78  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  8258950 tttttagtcattttcatgtgtttttaggaaacaatggatgtga 8258908  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 30018687 - 30018729
Alignment:
Q  35 gtttttggtcatttccatgtgtttt-taggaaacaatggatgt 76  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgt 30018729  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39065389 - 39065315
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    ||||||||||||| ||||||||||||  || | |||||||  |||||||||| ||||| |||| ||||||||||||    
T  39065389 ttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagggaacaatggatgt 39065315  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 47059312 - 47059359
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgtgagaaaa 83  Q
    ||||| ||||||| |||||||||||| ||||||||| |||||||||||    
T  47059312 ttttttgtcattttcatgtgtttttaagaaacaatgaatgtgagaaaa 47059359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 49632934 - 49632977
Alignment:
Q  33 atgtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  49632934 atgtttttggtcatttccatgtgtttctagaaatcaatggatgt 49632977  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 49632889 - 49632849
Alignment:
Q  36 tttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  49632889 tttttggtcatttctatgtgtttctaggaaacaatagatgt 49632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25939372 - 25939302
Alignment:
Q  1 ttataagtcagcggtagttaactatcgatgtaatgtttttggtcatttccatgtgtttttaggaaacaatg 71  Q
    ||||||| |||||||||||||||| || |    ||||||||||| ||||||| ||||| ||||||||||||    
T  25939372 ttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatg 25939302  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 9040955 - 9040996
Alignment:
Q  35 gtttttggtcatttccatgtgtttttaggaaacaatggatgt 76  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgt 9040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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