View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_low_5 (Length: 440)
Name: NF4112_low_5
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 422
Target Start/End: Original strand, 36978700 - 36979120
Alignment:
| Q |
2 |
catcacagactctacatattgatttcgaattatacgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctttaatcc |
101 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978700 |
catcacagactctacatattgattttgaattatgcgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctttaatcc |
36978799 |
T |
|
| Q |
102 |
tttcttaagaatattatctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttgagcttc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36978800 |
tttcttaagaatattatctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttcagcttc |
36978899 |
T |
|
| Q |
202 |
tgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978900 |
tgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttg |
36978999 |
T |
|
| Q |
302 |
ttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttccttt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979000 |
ttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttccttt |
36979099 |
T |
|
| Q |
402 |
agtttctactgtggctgatga |
422 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36979100 |
agtttctactgtggctgatga |
36979120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 36979752 - 36979906
Alignment:
| Q |
198 |
cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgat |
297 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
36979752 |
cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaa |
36979851 |
T |
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| Q |
298 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag |
352 |
Q |
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||||||||| | || ||||| |||| |||||||| | ||| ||||||||| |||| |
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| T |
36979852 |
gttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtag |
36979906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 36984396 - 36984462
Alignment:
| Q |
215 |
gcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaa |
281 |
Q |
| |
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| T |
36984396 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaa |
36984462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 422
Target Start/End: Original strand, 36996413 - 36996585
Alignment:
| Q |
250 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
349 |
Q |
| |
|
||||||||||||||| | || || ||||||||| | | ||||| | ||||||||| | || ||||| |||| ||||| || ||||| ||||||||| | |
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| T |
36996413 |
ctgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtg |
36996512 |
T |
|
| Q |
350 |
tagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatga |
422 |
Q |
| |
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|| || ||| || ||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
36996513 |
tacaatcctttggaaactctccaccagctctgtcactctctgctgttcctttagtttccactgtgactgatga |
36996585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 37000387 - 37000469
Alignment:
| Q |
223 |
gctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttac |
305 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||| ||| ||| ||||||||||||||| |
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| T |
37000387 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac |
37000469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 36980522 - 36980710
Alignment:
| Q |
234 |
agcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcc |
333 |
Q |
| |
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|||||||| | || ||||||||||||| |||||||| |||||| ||||| | ||| | ||||||||||||| | || | ||| |||| ||||||| | |
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| T |
36980522 |
agcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctc |
36980621 |
T |
|
| Q |
334 |
tgcagttccttctgcgtagaactcttgagatac-tcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatga |
422 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| || ||| ||||||| | ||||||| |||||||||||| ||||| |||||| ||||||| |
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| T |
36980622 |
tgcacttccttctgtgtagaactc-cgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatga |
36980710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 36995772 - 36995881
Alignment:
| Q |
313 |
aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg |
412 |
Q |
| |
|
||||| |||| |||||||| ||||| | ||||||| |||||||||| || |||| ||| |||| || |||||| |||||||||||| ||||||| | |
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| T |
36995772 |
aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta |
36995871 |
T |
|
| Q |
413 |
tggctgatga |
422 |
Q |
| |
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|||||||||| |
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| T |
36995872 |
tggctgatga |
36995881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 36986225 - 36986329
Alignment:
| Q |
250 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
349 |
Q |
| |
|
||||||||| | ||| | || |||||||||||| || ||| |||| |||||||||| | || ||||| |||| |||||||| ||||| ||||||||| | |
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| T |
36986225 |
ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
36986324 |
T |
|
| Q |
350 |
tagaa |
354 |
Q |
| |
|
||||| |
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|
| T |
36986325 |
tagaa |
36986329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 36984318 - 36984380
Alignment:
| Q |
119 |
ctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttgg |
181 |
Q |
| |
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||||| ||| ||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
36984318 |
ctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcctctttgg |
36984380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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