View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4112_low_6 (Length: 350)
Name: NF4112_low_6
Description: NF4112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4112_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 29 - 334
Target Start/End: Complemental strand, 48658155 - 48657850
Alignment:
| Q |
29 |
cgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagttt |
128 |
Q |
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| T |
48658155 |
cgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagttt |
48658056 |
T |
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| Q |
129 |
atgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaat |
228 |
Q |
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| T |
48658055 |
atgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaat |
48657956 |
T |
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| Q |
229 |
tttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48657955 |
tttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatct |
48657856 |
T |
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| Q |
329 |
tctttc |
334 |
Q |
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|||||| |
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| T |
48657855 |
tctttc |
48657850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 1460509 - 1460442
Alignment:
| Q |
257 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
324 |
Q |
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| T |
1460509 |
gcatcagctgggatgatgtctcctaacttaatgctgattatgtctcctggtactaaaattgcagcatc |
1460442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 1498827 - 1498894
Alignment:
| Q |
257 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
324 |
Q |
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| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatc |
1498894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 50274338 - 50274253
Alignment:
| Q |
245 |
tcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttc |
330 |
Q |
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| T |
50274338 |
tcaagcagacgagcatcagcaggaatgatatctcctaatttaatgctgatgatatcacctgggaccaaaattgcagcatcttcttc |
50274253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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