View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4113_low_1 (Length: 561)
Name: NF4113_low_1
Description: NF4113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4113_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Complemental strand, 1134548 - 1134013
Alignment:
| Q |
19 |
actatttgacaaaaaataatgatatattaatacaaatttagaaatcaacacaatattattatattaaatttctattttttaattctctttcccaatcaaa |
118 |
Q |
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| T |
1134548 |
actatttgacaaaaaataatgatatattgatacaaatttagaaatcaacacaatattattatattaaatttctattttttaattctctttcccaatcaaa |
1134449 |
T |
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| Q |
119 |
tcaatgtttataattgatgtattttatagctctatcttgtcttatctaatgttaataattagtgattagagatattccagttgttggagggttaatatgt |
218 |
Q |
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| T |
1134448 |
tcgatgtttataattgatatattttatagctctatcttgtcttatctaatgttaataattagtgattagagatattccagttgttggagggttaatatgt |
1134349 |
T |
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| Q |
219 |
ttaagtaactttatgagaaaataataaattcggttgaagtatatctatgaagtgcatgaatttgacgaaatcacagtaacatctgattttgttgtaatcc |
318 |
Q |
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| T |
1134348 |
gtaagtaactttatgacaaaataataaatttggttgaagtatatctatgaagtgcatgaatttgacgaaatcacaataacatctgattttgttgaaattc |
1134249 |
T |
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| Q |
319 |
taaattaataatattttagtgattaaccgtaattctaccaaaaagaaagcaagcatgaaacctgtggttttgtcatagagcttttgatctccaaatcaaa |
418 |
Q |
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| T |
1134248 |
taaattaataatattttagtgattaaccgtaattctaccaaaaagaaagcaagcatgaaacctgtggttttgtgatagagcttttgatctccaaatcaaa |
1134149 |
T |
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| Q |
419 |
gaattaagattgaatagaatagag--nnnnnnnnnatgtgaatggaatttggtatatttaaagagtgaagcaaaggaacttgtgaaggccacgtcatcag |
516 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1134148 |
gaattaagattgaatagaatagagtttttttttttatgtgaatggaatttggtatatttaaagggtgaagcaaaggaacttgtgaaggccacgtcatcag |
1134049 |
T |
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| Q |
517 |
ggactttgtttagtgatgaagaaggcatgatgatgt |
552 |
Q |
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| T |
1134048 |
ggactttgtttagtgatgaagaaggcatgatgatgt |
1134013 |
T |
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