View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4113_low_4 (Length: 345)
Name: NF4113_low_4
Description: NF4113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4113_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 21199577 - 21199896
Alignment:
| Q |
7 |
tcgaagaaaattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccac |
106 |
Q |
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| T |
21199577 |
tcgaataaaattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccac |
21199676 |
T |
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| Q |
107 |
gtccactctcttggcgtccctttctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaactt |
206 |
Q |
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| T |
21199677 |
gtccactctcttggcgtccctttctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaactt |
21199776 |
T |
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| Q |
207 |
gtcctcaatggcatcatacactgcttttctagcctttaatccacgtggaagatacaccaacatgatagacactttcataggttgtggatattgaacctca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
21199777 |
gtcctcaatggcatcatacactgcttttctagccttcaatccacgaggaagatacaccaacatgatagacactttcacaggttgtggatattgaacccca |
21199876 |
T |
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| Q |
307 |
ccttcaacataaatccatct |
326 |
Q |
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|||||||||||||||||||| |
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| T |
21199877 |
ccttcaacataaatccatct |
21199896 |
T |
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Back To:
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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 2948386 - 2948312
Alignment:
| Q |
7 |
tcgaagaaaattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagc |
81 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
2948386 |
tcgaataaaattgacaaataactttagaaacttaacattgcaatagtcaaatgatggctatgagcctgttctagc |
2948312 |
T |
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