View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4113_low_6 (Length: 269)

Name: NF4113_low_6
Description: NF4113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4113_low_6
NF4113_low_6
[»] scaffold0091 (3 HSPs)
scaffold0091 (146-262)||(29057-29173)
scaffold0091 (1-56)||(24717-24772)
scaffold0091 (1-56)||(28914-28969)
[»] scaffold0218 (2 HSPs)
scaffold0218 (147-262)||(14378-14493)
scaffold0218 (1-56)||(14234-14289)
[»] chr3 (9 HSPs)
chr3 (149-262)||(16642300-16642413)
chr3 (148-262)||(4712799-4712913)
chr3 (146-262)||(14062777-14062893)
chr3 (146-262)||(14055036-14055152)
chr3 (150-251)||(13926858-13926960)
chr3 (1-56)||(16642130-16642185)
chr3 (1-56)||(4713007-4713062)
chr3 (1-49)||(14063000-14063048)
chr3 (1-46)||(14055242-14055287)
[»] chr6 (4 HSPs)
chr6 (146-262)||(14989374-14989490)
chr6 (148-262)||(14980262-14980376)
chr6 (1-56)||(14980470-14980525)
chr6 (146-183)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (146-262)||(51658661-51658777)
chr1 (146-254)||(13882243-13882351)
chr1 (161-255)||(1567069-1567166)
chr1 (1-49)||(13882481-13882529)
chr1 (9-49)||(51658870-51658910)
[»] chr7 (10 HSPs)
chr7 (146-262)||(48376787-48376903)
chr7 (146-262)||(16060512-16060628)
chr7 (146-251)||(4531759-4531865)
chr7 (1-56)||(16060371-16060426)
chr7 (1-49)||(9080203-9080251)
chr7 (1-56)||(48376634-48376689)
chr7 (146-183)||(9080338-9080375)
chr7 (1-49)||(16069022-16069070)
chr7 (161-207)||(37945878-37945924)
chr7 (146-178)||(37946032-37946064)
[»] chr8 (5 HSPs)
chr8 (146-262)||(23658526-23658650)
chr8 (146-262)||(23657751-23657885)
chr8 (1-55)||(23657645-23657699)
chr8 (1-55)||(23658420-23658474)
chr8 (216-251)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (169-262)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (146-221)||(130795-130870)
scaffold0003 (1-56)||(130630-130685)
[»] chr2 (1 HSPs)
chr2 (146-251)||(23656470-23656576)
[»] scaffold0319 (1 HSPs)
scaffold0319 (192-262)||(13569-13639)
[»] scaffold0063 (2 HSPs)
scaffold0063 (1-56)||(28466-28521)
scaffold0063 (146-184)||(28342-28380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-56)||(18109-18164)
[»] chr4 (1 HSPs)
chr4 (167-237)||(3576240-3576311)
[»] scaffold1043 (1 HSPs)
scaffold1043 (1-49)||(1439-1487)


Alignment Details
Target: scaffold0091 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 29057 - 29173
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  29157 cctcattattcatctct 29173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24717 - 24772
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24717 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 24772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28914 - 28969
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  28914 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 28969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 14378 - 14493
Alignment:
Q  147 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  247 ctcattattcatctct 262  Q
    ||||||||||||||||    
T  14478 ctcattattcatctct 14493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14234 - 14289
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    ||||||||||||||  |||||||| ||||||||||||||| ||||| || ||||||    
T  14234 ttagacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtca 14289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 16642300 - 16642413
Alignment:
Q  149 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattcct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  249 cattattcatctct 262  Q
    ||||||||||||||    
T  16642400 cattattcatctct 16642413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 4712913 - 4712799
Alignment:
Q  148 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattcc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  248 tcattattcatctct 262  Q
    |||||||||||||||    
T  4712813 tcattattcatctct 4712799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 14062893 - 14062777
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  14062793 cctcattattcatctct 14062777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 14055152 - 14055036
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  | |    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaat 14055053  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  14055052 cctcattattcatctct 14055036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 13926960 - 13926858
Alignment:
Q  150 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatgtattcct 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||||||||| |||||||||| ||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  249 cat 251  Q
    |||    
T  13926860 cat 13926858  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16642130 - 16642185
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  16642130 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 16642185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4713062 - 4713007
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  4713062 ttagacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtca 4713007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14063048 - 14063000
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  14063048 ttagacaccatcattcaagtcatcatcataattatacgtcatcattctc 14063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14055287 - 14055242
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcatt 46  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  14055287 ttagacatcatcattcaagtcatcatcataattatacgtcatcatt 14055242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 14989490 - 14989374
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  246 cctcattattcatctct 262  Q
    | |||||||||||||||    
T  14989390 cgtcattattcatctct 14989374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 14980376 - 14980262
Alignment:
Q  148 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattcc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  248 tcattattcatctct 262  Q
    |||||||||||||||    
T  14980276 tcattattcatctct 14980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14980525 - 14980470
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14980525 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 14980470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcat 183  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 51658777 - 51658661
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  51658677 cctcattattcatctct 51658661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 13882351 - 13882243
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  246 cctcattat 254  Q
    |||||||||    
T  13882251 cctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  161 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcac-attatgt-attcctcattatt 255  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||| ||||| ||||| | |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13882529 - 13882481
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13882529 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctc 13882481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 51658910 - 51658870
Alignment:
Q  9 catcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    |||| ||||||||||| ||||||||||||||| ||||||||    
T  51658910 catcgttcaagtcatcatcataattatacgtcatcattctc 51658870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 48376787 - 48376903
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  48376887 cctcattattcatctct 48376903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 16060512 - 16060628
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtatt 245  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  246 cctcattattcatctct 262  Q
    |||||||||||||||||    
T  16060612 cctcattattcatctct 16060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 4531865 - 4531759
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatgtat 244  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||| ||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  245 tcctcat 251  Q
    |||||||    
T  4531765 tcctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16060371 - 16060426
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  16060371 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 16060426  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9080203 - 9080251
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  9080203 ttagacaccatcattcaagtcatcatcataattatacgtcatcattctc 9080251  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48376634 - 48376689
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||    
T  48376634 ttagacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtca 48376689  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcat 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16069070 - 16069022
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    ||||||| |||||||||| ||||| ||||||||||||||| ||||||||    
T  16069070 ttagacatcatcattcaaatcatcatcataattatacgtcatcattctc 16069022  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  161 atataaacattatcatttctcatcgtatttatttaattacatatata 207  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  146 ctcatcatcactaacatataaacattatcattt 178  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 23658526 - 23658650
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattaca--------tatatataatatcttcgtcatcactcttcgtcacat 237  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  238 tatgtattcctcattattcatctct 262  Q
    |||| ||||||||||||||||||||    
T  23658626 tatggattcctcattattcatctct 23658650  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 23657751 - 23657885
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac------------------atatatataatatcttcgtcatcactc 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatatatatatatatatatatataatatcttcgtcatcactc 23657850  T
Q  228 ttcgtcacattatgtattcctcattattcatctct 262  Q
    |||||||||||||| ||||||||||||||||||||    
T  23657851 ttcgtcacattatggattcctcattattcatctct 23657885  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23657645 - 23657699
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtc 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  23657645 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtc 23657699  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23658420 - 23658474
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtc 55  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  23658420 ttagacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtc 23658474  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  216 tcgtcatcactcttcgtcacattatgtattcctcat 251  Q
    |||||||||||||||||||||||||| |||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

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Target: scaffold1269 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 1 - 94
Alignment:
Q  169 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctct 262  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctct 94  T

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Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 130630 - 130685
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  130630 ttagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca 130685  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 23656576 - 23656470
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacattatgtat 244  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||  |||||||||||||||||||||||||| ||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggat 23656477  T
Q  245 tcctcat 251  Q
    |||||||    
T  23656476 tcctcat 23656470  T

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Target: scaffold0319 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 13639 - 13569
Alignment:
Q  192 tttaattacatatatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctct 262  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctct 13569  T

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Target: scaffold0063 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28521 - 28466
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  28521 ttagacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtca 28466  T

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Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  146 ctcatcatcactaacatataaacattatcatttctcatc 184  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18164 - 18109
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctcgtagtca 56  Q
    ||||| |||||||||||||||||| ||||||| |||| ||||||||||| ||||||    
T  18164 ttagataccatcattcaagtcatcatcataatcatacttcgtcattctcatagtca 18109  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  167 acattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgtcacat 237  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: scaffold1043 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1487 - 1439
Alignment:
Q  1 ttagacaccatcattcaagtcatcttcataattatacgtcgtcattctc 49  Q
    ||||||| |||||||||| ||||| ||||||||||||||  ||||||||    
T  1487 ttagacatcatcattcaaatcatcatcataattatacgttatcattctc 1439  T

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