View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4113_low_9 (Length: 211)

Name: NF4113_low_9
Description: NF4113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4113_low_9
NF4113_low_9
[»] chr3 (9 HSPs)
chr3 (1-109)||(54458434-54458543)
chr3 (1-88)||(43640689-43640785)
chr3 (1-90)||(21585534-21585626)
chr3 (1-86)||(38600929-38601017)
chr3 (1-86)||(32023225-32023312)
chr3 (1-86)||(33994553-33994640)
chr3 (12-86)||(1334910-1334987)
chr3 (4-86)||(30261629-30261714)
chr3 (1-37)||(21296627-21296663)
[»] chr5 (9 HSPs)
chr5 (1-86)||(3725082-3725170)
chr5 (1-88)||(6610728-6610818)
chr5 (1-86)||(4044601-4044690)
chr5 (1-91)||(39008020-39008112)
chr5 (1-52)||(15814595-15814646)
chr5 (1-51)||(11099602-11099652)
chr5 (1-86)||(33012249-33012337)
chr5 (1-83)||(7276282-7276366)
chr5 (5-42)||(41686620-41686657)
[»] chr7 (12 HSPs)
chr7 (1-86)||(7426003-7426089)
chr7 (1-86)||(46095572-46095658)
chr7 (1-86)||(48981274-48981362)
chr7 (1-51)||(31581567-31581617)
chr7 (7-86)||(2846806-2846888)
chr7 (1-88)||(33774165-33774255)
chr7 (12-86)||(37496532-37496609)
chr7 (1-51)||(34963935-34963985)
chr7 (1-42)||(11616503-11616544)
chr7 (4-86)||(18234800-18234886)
chr7 (1-42)||(40590949-40590990)
chr7 (1-86)||(12308275-12308362)
[»] chr2 (12 HSPs)
chr2 (1-94)||(7213362-7213458)
chr2 (1-86)||(28572106-28572194)
chr2 (1-86)||(3123539-3123626)
chr2 (1-86)||(40964948-40965035)
chr2 (1-86)||(3100294-3100383)
chr2 (1-86)||(44534611-44534698)
chr2 (1-39)||(13375598-13375636)
chr2 (1-51)||(24451716-24451766)
chr2 (1-39)||(41436024-41436062)
chr2 (1-51)||(43077849-43077899)
chr2 (1-38)||(5212082-5212119)
chr2 (46-86)||(20696953-20696993)
[»] chr4 (13 HSPs)
chr4 (1-71)||(29644266-29644338)
chr4 (1-86)||(48740416-48740503)
chr4 (1-51)||(33047431-33047481)
chr4 (1-51)||(49812162-49812212)
chr4 (4-86)||(43420920-43421005)
chr4 (1-51)||(8294964-8295014)
chr4 (1-51)||(18849883-18849933)
chr4 (1-86)||(20964418-20964506)
chr4 (1-39)||(28974252-28974290)
chr4 (1-83)||(31862695-31862777)
chr4 (1-79)||(18509744-18509824)
chr4 (2-39)||(45289982-45290019)
chr4 (1-76)||(51572351-51572429)
[»] chr8 (11 HSPs)
chr8 (1-86)||(138929-139016)
chr8 (1-42)||(33191033-33191074)
chr8 (1-89)||(38252562-38252653)
chr8 (45-88)||(10729091-10729134)
chr8 (1-86)||(2119611-2119699)
chr8 (1-39)||(5391993-5392031)
chr8 (1-86)||(14689855-14689943)
chr8 (1-51)||(32241548-32241598)
chr8 (1-38)||(29730992-29731029)
chr8 (46-86)||(29451243-29451283)
chr8 (1-73)||(39171454-39171526)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-44)||(9673-9716)
[»] chr1 (12 HSPs)
chr1 (1-86)||(2886066-2886154)
chr1 (1-86)||(2219572-2219659)
chr1 (1-76)||(19533044-19533122)
chr1 (1-52)||(46536272-46536323)
chr1 (1-39)||(17342773-17342811)
chr1 (1-39)||(36784259-36784297)
chr1 (1-42)||(7785398-7785439)
chr1 (1-38)||(52830538-52830575)
chr1 (1-86)||(4659322-4659409)
chr1 (1-76)||(8773143-8773221)
chr1 (1-86)||(26924394-26924481)
chr1 (46-86)||(33149167-33149207)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-76)||(97964-98042)
[»] scaffold0028 (1 HSPs)
scaffold0028 (7-76)||(26514-26585)
[»] chr6 (4 HSPs)
chr6 (1-76)||(15081328-15081406)
chr6 (1-38)||(3604724-3604761)
chr6 (1-86)||(30064073-30064160)
chr6 (46-86)||(34915983-34916023)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-39)||(230202-230240)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 54458434 - 54458543
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttt-ttgcaaacgattcagttattatgggacagagggagtagtatatagtgcat 99  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  54458434 taatattgtattgaaaagtaaaattactcagttattttgggacaatttttttgcaaacgattcagttattatgggatagagggagtagtatataatgcat 54458533  T
Q  100 tgtaatgctt 109  Q
    ||||||||||    
T  54458534 tgtaatgctt 54458543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43640689 - 43640785
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---------taattttttgcaaacgattcagttattatgggacagagggagtagt 88  Q
    |||||||||| ||||||||||||| |||||||||||||||||         |  |||||||||||  | ||||||||||||||||||||||||||||    
T  43640689 taatattgtattgaaaagtgaaatgactcagttattttgggaccttttttttttttttttgcaaataactcagttattatgggacagagggagtagt 43640785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 21585534 - 21585626
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttt---ttgcaaacgattcagttattatgggacagagggagtagtat 90  Q
    |||||||||| || |||||||||| ||||||||||||||||| | ||||   ||| ||| || ||||||||||||| || ||| |||||||||    
T  21585534 taatattgtattggaaagtgaaatgactcagttattttgggacacttttttattgaaaatgactcagttattatggaacggagagagtagtat 21585626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38600929 - 38601017
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttt---ttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||| ||||||| ||||| ||||||| | | ||||||   ||||||| || |||||||||||||||| |||||||||    
T  38600929 taatattgtattgaaaggtgaaatgactcaattattttagaacaatttttttttgcaaatgactcagttattatgggacggagggagta 38601017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32023225 - 32023312
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga--taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| || |||||||||| ||||||||||||| |||  |  ||||||||||  || ||||||||||||||||  ||||||||    
T  32023225 taatattgtattggaaagtgaaatgactcagttattttaggacttttttttttgcaattgactcagttattatgggacgaagggagta 32023312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 33994640 - 33994553
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattttt--tgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| ||||||||||||| ||| | |||||  |||||| |  |||||||||||  ||| |||||||||    
T  33994640 taatattgtattgaaaagtgaaatgactcagttatttttggacatttttttgtgcaaatggctcagttattatttgacggagggagta 33994553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1334910 - 1334987
Alignment:
Q  12 tgaaaagtgaaattactcagttattttgggataa---ttttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||||||||| ||||| ||||||| | | ||   ||||||||||| || |||||||||||||||| |||||||||    
T  1334910 tgaaaagtgaaatgactcaattattttagaacaacttttttttgcaaatgactcagttattatgggacggagggagta 1334987  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 30261629 - 30261714
Alignment:
Q  4 tattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||| |||||||||||||   ||| || |||||||| |||   |||||||||| |  ||||||||||||||||||||||||||    
T  30261629 tattgtattgaaaagtgaaatgggtcaatttttttgggacaatatttttttgcaaatggctcagttattatgggacagagggagta 30261714  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21296627 - 21296663
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattt 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  21296627 taatattgtattgaaaagtgaaatgactcagttattt 21296663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3725170 - 3725082
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttt---ttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| ||||||||||||| ||| | ||||   ||||||| ||||||||||||||||||| |||||||||    
T  3725170 taatattgtattgaaaagtgaaatgactcagttattttaggacacttttttattgcaaatgattcagttattatgggacggagggagta 3725082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6610818 - 6610728
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggacagagggagtagt 88  Q
    |||||||||| | ||||||||||| |||||||||||||||||   |  ||||||| ||| || |||||||||||||||| |||||||||||    
T  6610818 taatattgtatttaaaagtgaaatgactcagttattttgggactttttttttttgaaaatgactcagttattatgggacggagggagtagt 6610728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4044601 - 4044690
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatt----ttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| | ||| ||||||||||| | ||    ||||||||| || |||||||||||||||| |||||||||    
T  4044601 taatattgtattgaaaagtgaaatgattcaattattttgggacattttttattttgcaaatgactcagttattatgggacggagggagta 4044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39008112 - 39008020
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg--ataattttttgcaaacgattcagttattatgggacagagggagtagtata 91  Q
    |||||||||| ||||||||||||| ||| ||||||||| ||  ||  |||||||||||  | ||||||||| |||||| ||||||||| ||||    
T  39008112 taatattgtattgaaaagtgaaatgacttagttattttaggacatttttttttgcaaataactcagttattgtgggacggagggagtaatata 39008020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15814646 - 15814595
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattttttg 52  Q
    |||||||||| ||||||||||||| |||||||||||||| || | |||||||    
T  15814646 taatattgtattgaaaagtgaaatgactcagttattttgagacatttttttg 15814595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11099602 - 11099652
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| || |||||||||| ||||||||||||||||| | ||||||    
T  11099602 taatattgtattggaaagtgaaatgactcagttattttgggacattttttt 11099652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 33012337 - 33012249
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||| | |||||||||||||  ||||| |||||||||||| |   |||||||||| || || ||||||||||||| ||| |||||    
T  33012337 taatattgcattgaaaagtgaaatggctcagatattttgggatactttgtttttgcaaatgactcggttattatgggacggagtgagta 33012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7276366 - 7276282
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga--taattttttgcaaacgattcagttattatgggacagaggga 83  Q
    |||||||||| |||||||| |||| ||||||||||||| |||  |  ||||||||||| |  ||||||||| |||||| ||||||    
T  7276366 taatattgtattgaaaagtaaaataactcagttattttaggacttttttttttgcaaatggctcagttattttgggacggaggga 7276282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 41686620 - 41686657
Alignment:
Q  5 attgtactgaaaagtgaaattactcagttattttggga 42  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  41686620 attgtattgaaaagtgaaatgactcagttattttggga 41686657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7426003 - 7426089
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggata-attttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||||||||||  |||||||||||||||| |  ||||||||||| |  ||||||||| |||||| |||||||||    
T  7426003 taatattgtattgaaaagtgaaatggctcagttattttgggacactttttttgcaaatggctcagttattgtgggacggagggagta 7426089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46095572 - 46095658
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga-taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| |||| |||||||||| | |  |||||||||||||| | |||||||||||||| ||| |||||    
T  46095572 taatattgtattgaaaagtgaaatgactcggttattttggaattttttttttgcaaacgacttagttattatgggacggagagagta 46095658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48981362 - 48981274
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | |   ||||||||||||  ||  |||||||||||| |||||||||    
T  48981362 taatattgtattgaaaagtgaaatgactcagttattttgggacactttatttttgcaaacggctcgattattatgggacggagggagta 48981274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31581567 - 31581617
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||| ||||||    
T  31581567 taatattgtattgaaaagtgaaatgactcagttattttaggatactttttt 31581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 2846806 - 2846888
Alignment:
Q  7 tgtactgaaaagtgaaattactcagttattttgggataatttt---ttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||| ||||||||||||| ||||| ||||||||||| | ||||   ||| ||| || |||||||||||||||| |||||||||    
T  2846806 tgtattgaaaagtgaaatgactcacttattttgggacacttttttattgaaaatgactcagttattatgggacggagggagta 2846888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33774165 - 33774255
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggacagagggagtagt 88  Q
    |||||||||| ||||||||||||| ||||||||||||||| |   |  ||||||| ||| || ||||||||| || ||| |||||||||||    
T  33774165 taatattgtattgaaaagtgaaatgactcagttattttggaacactttttttttgtaaatgactcagttattgtgagacggagggagtagt 33774255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37496532 - 37496609
Alignment:
Q  12 tgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||||||   ||| || ||||||||||||   |||||||||| || |||||||||||||||| |||||||||    
T  37496532 tgaaaagtgaaatgggtcaatttttttgggataatatttttttgcaaatgactcagttattatgggacggagggagta 37496609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34963935 - 34963985
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    ||||| |||| ||||||||||||| ||||||||||||||||| | ||||||    
T  34963935 taatactgtattgaaaagtgaaatgactcagttattttgggacattttttt 34963985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11616544 - 11616503
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga 42  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  11616544 taatattgtattgaaaagtgaaatggctcagttattttggga 11616503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 18234886 - 18234800
Alignment:
Q  4 tattgtactgaaaagtgaaattactcagttattttgggataattttt----tgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||| | ||||||||||| |||||||||||||  || | |||||    |||||| |||||||||||||| |||| |||||||||    
T  18234886 tattgtattaaaaagtgaaatgactcagttattttatgacatttttttgtgtgcaaatgattcagttattataggacggagggagta 18234800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40590949 - 40590990
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga 42  Q
    |||||||||| | ||||||||||| |||||||||||||||||    
T  40590949 taatattgtatttaaaagtgaaatgactcagttattttggga 40590990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12308362 - 12308275
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg--ataattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||| |||||| |||||||||||||| |  ||  |||||| |||| || || |||||| |||||| |||||||||    
T  12308362 taatattgtattgaaaattgaaatgactcagttattttgagacattttttttttcaaatgactcggttattgtgggacggagggagta 12308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7213458 - 7213362
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggata---attttttgcaaacgattcagttattatgggacagagggagtagtatatag 94  Q
    |||||||||| ||||||||||||| | | | ||||||||||| |   |||||||||||| || ||| |||||||||||| ||||||||||| |||||    
T  7213458 taatattgtattgaaaagtgaaatgatttaattattttgggacacttattttttgcaaatgactcacttattatgggacggagggagtagtttatag 7213362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 28572194 - 28572106
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattt---tttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | |||   |||||||| |  ||||||||| |||||| |||||||||    
T  28572194 taatattgtattgaaaagtgaaatgactcagttattttgggacactttttatttgcaaatgtctcagttattgtgggacggagggagta 28572106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3123626 - 3123539
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga--taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| || |||||||||| |||||||||||||| ||  |  ||||||||||  || |||||||||||||||| |||||||||    
T  3123626 taatattgtattggaaagtgaaatgactcagttattttgagatttttttttttgcaattgactcagttattatgggacggagggagta 3123539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40965035 - 40964948
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||| | |||| |||||||||||||||||   |  ||||||||||| || |||||||||||||||| |||||||||    
T  40965035 taatattgtattgaaaaat-aaataactcagttattttgggacatttcttttttgcaaatgactcagttattatgggactgagggagta 40964948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3100383 - 3100294
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga----taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| |||||||||||||| ||    |  ||||||||||| |  ||||||||| |||||| |||||||||    
T  3100383 taatattgtattgaaaagtgaaatgactcagttattttgagacacttttttttttgcaaatggctcagttattgtgggacggagggagta 3100294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 44534611 - 44534698
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg--ataattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| |||||||||||||| |  ||  ||||||| ||| || ||||||||| |||||| || ||||||    
T  44534611 taatattgtattgaaaagtgaaatgactcagttattttgagacatttttttttgtaaatgactcagttattgtgggacggatggagta 44534698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13375598 - 13375636
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  13375598 taatattgtattgaaaagtgaaatgactcagttattttg 13375636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24451766 - 24451716
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| || |||||||||| ||| ||||||||||||||| ||||||    
T  24451766 taatattgtattggaaagtgaaatgacttagttattttgggatactttttt 24451716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41436062 - 41436024
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  41436062 taatattgtattgaaaagtgaaatgactcagttattttg 41436024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43077849 - 43077899
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| |||| |||||||||||| | ||||||    
T  43077849 taatattgtattgaaaagtgaaatgactccgttattttgggacactttttt 43077899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5212082 - 5212119
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttatttt 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  5212082 taatattgtattgaaaagtgaaataactcagttatttt 5212119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 20696953 - 20696993
Alignment:
Q  46 ttttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  20696953 ttttttgcaaatgactcagttattatgggacggagggagta 20696993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29644338 - 29644266
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataa--ttttttgcaaacgattcagttattat 71  Q
    |||||||||| |||||||||||||  |||||||||||||||| ||  ||||||||||| || |||||||||||    
T  29644338 taatattgtattgaaaagtgaaatgtctcagttattttgggacaattttttttgcaaatgactcagttattat 29644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48740503 - 48740416
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg--ataattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||  ||||||||||||| |||||||||||||| |  ||  ||||||||||| || |||||||||||| ||| |||||||||    
T  48740503 taatattgttttgaaaagtgaaatgactcagttattttgagacatttttttttgcaaatgactcagttattatgagacggagggagta 48740416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33047481 - 33047431
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  33047481 taatattgtattgaaaagtgaaatgactcagttattttgggacactttttt 33047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49812212 - 49812162
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  49812212 taatattgtattgaaaagtgaaatgactcagttattttgggacattttttt 49812162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 43421005 - 43420920
Alignment:
Q  4 tattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||| |||||||||||||  |||||||||||||| |   |  ||||||||||| || ||||||||| |||||| |||||||||    
T  43421005 tattgtattgaaaagtgaaatggctcagttattttggaacattttttttttgcaaaagaatcagttattgtgggacggagggagta 43420920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8295014 - 8294964
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| |||| |||||||||||| | ||||||    
T  8295014 taatattgtattgaaaagtgaaatgactcggttattttgggacactttttt 8294964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18849883 - 18849933
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    ||||||| || ||||||||||||| ||||||||||||||||| | ||||||    
T  18849883 taatattttattgaaaagtgaaatgactcagttattttgggacattttttt 18849933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20964418 - 20964506
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||||||||||   ||| || || ||||| |||   |||||||||| || |||||||||||||||| |||||||||    
T  20964418 taatattgtattgaaaagtgaaataggtcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 20964506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28974290 - 28974252
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  28974290 taatattgtattgaaaagtgaaatgactcagttattttg 28974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31862777 - 31862695
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattttttgcaaacgattcagttattatgggacagaggga 83  Q
    |||||| ||| ||||||||||||| |||| |||||||||||||  |||||| |||| || ||| ||||| | |||| ||||||    
T  31862777 taatatcgtattgaaaagtgaaatgactcggttattttgggattttttttttcaaatgactcaattattgttggacggaggga 31862695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 18509824 - 18509744
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga--taattttttgcaaacgattcagttattatgggacaga 79  Q
    |||||| ||| ||||||  ||||||||| | |||||||| ||  || ||||||||||| || |||||||||||||||||||    
T  18509824 taatatcgtattgaaaaacgaaattactaatttattttgcgacatatttttttgcaaatgactcagttattatgggacaga 18509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 45290019 - 45289982
Alignment:
Q  2 aatattgtactgaaaagtgaaattactcagttattttg 39  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  45290019 aatattgtactgaaaagtgaaataattcagttattttg 45289982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51572351 - 51572429
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg---ataattttttgcaaacgattcagttattatgggac 76  Q
    |||||||||| ||||||||||||| | ||| ||||||| ||   ||| |||||| |||| | |||||||||||||||||    
T  51572351 taatattgtattgaaaagtgaaataagtcaattattttaggacaatatttttttacaaaaggttcagttattatgggac 51572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 139016 - 138929
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt--gcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| |||| |||||||||||| | ||||||  ||||| |  |||||||||||||||| || ||||||    
T  139016 taatattgtattgaaaagtgaaatgactcggttattttgggacattttttttcgcaaatggctcagttattatgggacggatggagta 138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33191033 - 33191074
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga 42  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  33191033 taatattgtattgaaaagtgaaatgactcagttattttggga 33191074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38252562 - 38252653
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggacagagggagtagta 89  Q
    ||||||||||   |||||||||||   |||||||||||||||   |  ||||||||||| || |||||||||||||||| ||||||||||||    
T  38252562 taatattgtatcaaaaagtgaaatggttcagttattttgggacactttttttttgcaaatgactcagttattatgggacggagggagtagta 38252653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 10729091 - 10729134
Alignment:
Q  45 attttttgcaaacgattcagttattatgggacagagggagtagt 88  Q
    |||||||||||| || |||||||||||||||| |||||||||||    
T  10729091 attttttgcaaatgactcagttattatgggacggagggagtagt 10729134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2119699 - 2119611
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttt---ttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||| |||||||  |||||||||||||||| | ||||   || |||| || ||||||||||||| || |||||||||    
T  2119699 taatattgtattgaaatgtgaaatagctcagttattttgggacactttttaattacaaatgactcagttattatggaacggagggagta 2119611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5392031 - 5391993
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  5392031 taatattgtattgaaaagtgaaatgactcagttattttg 5391993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14689943 - 14689855
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||||||||||   ||| || || ||||| |||   |||||||||| || |||||||||||||||| |||||||||    
T  14689943 taatattgtattgaaaagtgaaatgggtcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 14689855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32241548 - 32241598
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt 51  Q
    |||||||||| ||||||||||||| ||||| ||||||| ||||| ||||||    
T  32241548 taatattgtattgaaaagtgaaataactcatttattttaggatactttttt 32241598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29730992 - 29731029
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttatttt 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  29730992 taatattgtattgaaaagtgaaatgactcagttatttt 29731029  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 29451283 - 29451243
Alignment:
Q  46 ttttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||||||| ||||||||||||||||||| || ||||||    
T  29451283 ttttttgcaaatgattcagttattatgggacggatggagta 29451243  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39171526 - 39171454
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattttttgcaaacgattcagttattatgg 73  Q
    ||||||| || |||||||| |||| ||||||||||||||||| | ||||||  ||| || ||| |||||||||    
T  39171526 taatattatattgaaaagttaaatgactcagttattttgggacatttttttttaaatgactcaattattatgg 39171454  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9673 - 9716
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggata 44  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  9673 taatattgtattgaaaagtgaaattactctgttattttgggata 9716  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2886154 - 2886066
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat---tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||||  ||| || || ||||| |||   |||||||||| || |||||||||||||||| |||||||||    
T  2886154 taatattgtattgaaaagtgaaattgatcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 2886066  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2219572 - 2219659
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat--tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| |||||||||||||   ||| ||||||||||| |||  |||||||||| | |||  |||||||||||| |||||||||    
T  2219572 taatattgtattgaaaagtgaaatggttcaattattttgggacaattatttttgcaaatggttcgattattatgggactgagggagta 2219659  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19533044 - 19533122
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggac 76  Q
    |||||||||| |||||||| |||| |||||||||||||||||   |  ||||||||||| || |||||||||| |||||    
T  19533044 taatattgtattgaaaagtaaaatgactcagttattttgggattttttttttttgcaaatgactcagttattacgggac 19533122  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46536323 - 46536272
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattttttg 52  Q
    |||||||||| ||||||||||||| |||||||||||||| || | |||||||    
T  46536323 taatattgtattgaaaagtgaaatgactcagttattttgagacacttttttg 46536272  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17342811 - 17342773
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  17342811 taatattgtattgaaaagtgaaataactcagttattttg 17342773  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36784297 - 36784259
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  36784297 taatattgtattgaaaagtgaaatgactcagttattttg 36784259  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7785398 - 7785439
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga 42  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  7785398 taatattgtattgaaaagtgaaatgactcagttattatggga 7785439  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52830538 - 52830575
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttatttt 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  52830538 taatattgtattgaaaagtgaaatgactcagttatttt 52830575  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4659409 - 4659322
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataattt--tttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||| |||| |||| |||||||||  ||||||||||| | | |||||  ||| ||||  ||||| ||||||||||||||||||||||    
T  4659409 taataatgtattgaagagtgaaattggtcagttattttagaacaatttattttacaaaatattcacttattatgggacagagggagta 4659322  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8773221 - 8773143
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggga---taattttttgcaaacgattcagttattatgggac 76  Q
    ||||||| || |||||| ||||||  ||||||||||||||||   |  ||||||||||| || ||||||||||||||||    
T  8773221 taatattctattgaaaaatgaaatagctcagttattttgggacactttttttttgcaaatgactcagttattatgggac 8773143  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26924394 - 26924481
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataat--tttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| ||||||||||||| | ||| || || ||||| |||  ||||| |||| || ||| |||||||||||| |||||||||    
T  26924394 taatattgtattgaaaagtgaaatgaatcaatttttctgggacaatattttttacaaatgactcaattattatgggacggagggagta 26924481  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 33149207 - 33149167
Alignment:
Q  46 ttttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||||||| | |||||||||||||||||| ||||||||    
T  33149207 ttttttgcaaatggttcagttattatgggacaaagggagta 33149167  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 98042 - 97964
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggata---attttttgcaaacgattcagttattatgggac 76  Q
    ||||||| || ||||||||||||| |||| ||||||||| || |   |||||||||||| || ||||||||||||||||    
T  98042 taatattatattgaaaagtgaaatgactcggttattttgagacacttattttttgcaaatgactcagttattatgggac 97964  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 26585 - 26514
Alignment:
Q  7 tgtactgaaaagtgaaattactcagttattttgggataatttt--ttgcaaacgattcagttattatgggac 76  Q
    |||| ||||||||||||| ||||| ||||||||||||| ||||  ||| ||| || ||||||||||||||||    
T  26585 tgtattgaaaagtgaaatgactcatttattttgggatattttttattgaaaatgactcagttattatgggac 26514  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15081406 - 15081328
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttgggataatttttt---gcaaacgattcagttattatgggac 76  Q
    |||||||||| ||||||||||||||  ||||||||||||||| | ||||||   ||| | || ||||||||||||||||    
T  15081406 taatattgtattgaaaagtgaaattgttcagttattttgggacacttttttttcgcagatgactcagttattatgggac 15081328  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3604724 - 3604761
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttatttt 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  3604724 taatattgtattgaaaagtgaaatgactcagttatttt 3604761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30064073 - 30064160
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttggg--ataattttttgcaaacgattcagttattatgggacagagggagta 86  Q
    |||||||||| || |||||||||| ||||||||||||| ||  ||  ||||||||||  || ||| |||||||||||| || ||||||    
T  30064073 taatattgtattggaaagtgaaatgactcagttattttaggacatttttttttgcaattgactcaattattatgggacggaaggagta 30064160  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 34915983 - 34916023
Alignment:
Q  46 ttttttgcaaacgattcagttattatgggacagagggagta 86  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  34915983 ttttttgcaaatgactcagttattatgggacggagggagta 34916023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 230240 - 230202
Alignment:
Q  1 taatattgtactgaaaagtgaaattactcagttattttg 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  230240 taatattgtattgaaaagtgaaatgactcagttattttg 230202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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