View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4114_high_1 (Length: 649)
Name: NF4114_high_1
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Original strand, 53514366 - 53514983
Alignment:
| Q |
19 |
gcaaacaggtagacatagatatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53514366 |
gcaaacaggtagacatagatatcacacaaatactcatacctattggtacggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctt |
53514465 |
T |
|
| Q |
119 |
tcctctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacacatttctcaagaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
53514466 |
tcctctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagt-atgcattaccactggacacatttctcaagaaaat |
53514564 |
T |
|
| Q |
219 |
gtacatgaaaaagaaaatgatctacaattattggaaccaatacnnnnnnnncacaaacataggcaaacctgctttctttaacctctccagttacaccatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
53514565 |
gtacatgaaaaagaaaatgatctacaattattggaaccaatacaaaaaaaacacaagcataggcaaacctgctttctttaacctctccagttacgccatc |
53514664 |
T |
|
| Q |
319 |
gacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53514665 |
gacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttt--- |
53514761 |
T |
|
| Q |
419 |
ataatacaatatagattccaacagtttaagatctctctcatttnnnnnnnntataaaaagaaagatctccattcaaactctggagtctttcggaaagttt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
53514762 |
-taatacaatatagattccaacagtttaagatctctctcatttaaaaaaaatataaaaagaaagatctccactcaaactctggagtctttcggaaagttt |
53514860 |
T |
|
| Q |
519 |
aagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataatttaat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
53514861 |
aagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctattgtcatataatttaat |
53514960 |
T |
|
| Q |
619 |
tttccatgagcctagcctatgct |
641 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53514961 |
tttccatgagcctagcctatgct |
53514983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 281 - 641
Target Start/End: Original strand, 53510938 - 53511282
Alignment:
| Q |
281 |
gcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
380 |
Q |
| |
|
||||||||||||||| || ||| |||||| | ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53510938 |
gcaaacctgctttctctaccctttccagtcaagccatcaacaacaagcgatcttgtcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
53511037 |
T |
|
| Q |
381 |
ttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacagtttaagatctctctcatttnnnnnnnntataaaaagaa |
480 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
53511038 |
ttgactgttcaaaatgataggaaaagtggacatttta----atacaatataaattccaacagtttaagatctctctcattt------------aaaacta |
53511121 |
T |
|
| Q |
481 |
agatctccattcaaactctggagtctttcggaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcact |
580 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |
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|
| T |
53511122 |
agatctccactcaaactctggagtctttcagaaagttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcatt |
53511221 |
T |
|
| Q |
581 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgct |
641 |
Q |
| |
|
||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
53511222 |
aactaccatgaaaaacctctatctttgtatagtttaattttccatgaccctagcctatgct |
53511282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 53548410 - 53548837
Alignment:
| Q |
19 |
gcaaacaggtagacatagatatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctt |
118 |
Q |
| |
|
|||| ||||||||||||| || | |||||| ||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
53548410 |
gcaagcaggtagacatagtta-cgcacaaaaactcatacctactggtatgaaggtaaaatcagcaattctcctttcaatattctggataattttgtcctt |
53548508 |
T |
|
| Q |
119 |
tcctctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac--atttctcaagaaa |
216 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| || ||||| |||||||||||| | ||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
53548509 |
tcctctcttcagaaacattcctgaactagttcgaaccct--acaggaaggggatatatctagagtaatgcattaccactagacactagtctctcaagaaa |
53548606 |
T |
|
| Q |
217 |
atgtacatg------aaaaagaaaatgatctacaattattggaaccaatacnnnnnnnncacaaacataggcaaacctgctttctttaacctctccagtt |
310 |
Q |
| |
|
| || ||| ||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||| || || |||||| |
|
|
| T |
53548607 |
aggtttatggaaagaaaaaaaaaaatgatctacaattattggaaccgatac-aaaaaaacacaagcaaaggcaaacctgctttctgtactctttccagtc |
53548705 |
T |
|
| Q |
311 |
acaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatgga |
410 |
Q |
| |
|
| |||||| ||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| | ||| || |
|
|
| T |
53548706 |
ttgctatcgacgacacttgattttgccaagaaaggcttggccagattgatcaaatgctcacattcttctttggactgttcacaatggtaggaagaattga |
53548805 |
T |
|
| Q |
411 |
ggttttatataatacaatatagattccaacagttta |
446 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |
|
|
| T |
53548806 |
cattt----taatacaatataaattccaacagttta |
53548837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 53510717 - 53510929
Alignment:
| Q |
20 |
caaacaggtagacatagatatcacacaaata-ctcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctt |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53510717 |
caaactggtagacatagatatcacacaaaaaactcatacctactggtatggaggtaatatcagcaattctctgttcaatattctggacaattttgtcctt |
53510816 |
T |
|
| Q |
119 |
tcctctatccagaaacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccact-ggacac-att-tctcaagaa |
215 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
53510817 |
tcctctctccagaaaccttcctgaactagttcgagcgct--acatgcaggggatatattaaaagtaatgcattaccactaagacactattctctcaagaa |
53510914 |
T |
|
| Q |
216 |
aatgtacatgaaaaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
53510915 |
aatgtacatgaaaaa |
53510929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 53524855 - 53525014
Alignment:
| Q |
42 |
acacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacattcctg |
141 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
53524855 |
acacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctg |
53524954 |
T |
|
| Q |
142 |
aactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac |
203 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||| |||||||||||||||||| || ||||| |
|
|
| T |
53524955 |
aactagttcgaacgct--acatgcatgggatataacaaaagtaatgcattaccgctcgacac |
53525014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 410
Target Start/End: Original strand, 53525047 - 53525187
Alignment:
| Q |
270 |
cacaaacataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctc |
369 |
Q |
| |
|
||||| |||||||||||||| || | || ||| ||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53525047 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
53525146 |
T |
|
| Q |
370 |
acattcttcttttgactgttcaaaatgataggcaaaatgga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53525147 |
acattcttcttttgactgttcaaaatgataggcagaatgga |
53525187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 20197301 - 20197384
Alignment:
| Q |
327 |
gtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatgga |
410 |
Q |
| |
|
|||||||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20197301 |
gtgatctttccaagtaaggcttgccaagtttgatcaaatgctcacattcttcttttgactgttcaaaatgataggcataatgga |
20197384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 20197015 - 20197167
Alignment:
| Q |
38 |
tatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacatt |
137 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||| ||||||| | |||||||||| || |||||| ||||||||||| || | | || |
|
|
| T |
20197015 |
tatcacacaaaatctcatacctactggtatggagataatatcaggaattctctgctcaatattcttgataattttatcctttcctctcctcaaagtcctt |
20197114 |
T |
|
| Q |
138 |
cctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcatta |
192 |
Q |
| |
|
|||||||||||||| ||| | ||| || |||||||||||||||||||||||| |
|
|
| T |
20197115 |
tctgaactagttcgaaggct--ataggtagaggatatatcaaaagtaatgcatta |
20197167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 514 - 641
Target Start/End: Original strand, 53525323 - 53525444
Alignment:
| Q |
514 |
agtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataat |
613 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||| | |||||||| ||||| |||||||| || || ||| |
|
|
| T |
53525323 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
53525416 |
T |
|
| Q |
614 |
ttaattttccatgagcctagcctatgct |
641 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
53525417 |
ttaatttcccatgagcctagcctatgct |
53525444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 641
Target Start/End: Original strand, 53548992 - 53549052
Alignment:
| Q |
581 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgct |
641 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
53548992 |
aaccacccagaacaacctctatcttcatacaatttagttttccatgagcctagcctatgct |
53549052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 605 - 641
Target Start/End: Original strand, 20197525 - 20197561
Alignment:
| Q |
605 |
tcatataatttaattttccatgagcctagcctatgct |
641 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
20197525 |
tcatataacttaattttccatgagcatagcctatgct |
20197561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 16608492 - 16608400
Alignment:
| Q |
346 |
cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacag |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||| || ||| |||||||||||| |||||||||| |
|
|
| T |
16608492 |
cttggcaagattgatcaaatgctcacattcttattttgattgtacaaaatgataggcataatagacattt----taatacaatataaattccaacag |
16608400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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