View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4114_high_10 (Length: 429)
Name: NF4114_high_10
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 31550937 - 31551346
Alignment:
| Q |
1 |
tcaaccatatacattgaacttgatattatatcccttaattttaaattcaaatatacctatatttataagcatatgaacttaacgtcaacaaaatttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31550937 |
tcaaccatatacattgaacttgatattatatcccttaattttaaattcaaatatacctatatttataaccatatgaacttaacgacaacaaaatttcaaa |
31551036 |
T |
|
| Q |
101 |
cttgaactgaccttataattaaacctttctttctttttggctttttcatttaacaatgcttctacatcttctcttgtgaactctattacaccataatccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31551037 |
cttgaactgaccttataattaaacctttctttctttttggctttttcatttaacaatgcttctacatcttctcttgtgaactctattacaccataatccg |
31551136 |
T |
|
| Q |
201 |
atccagcattgcttggaggagcactacttaggccaacatcgtgtccgccatttacaactgttaaagcttgccttattcttccatttatcggagtctccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31551137 |
atccagcattgcttggaggagcactacttaggccaacatcgtgtccgccatttacaactgttaaagcttgccttattcttccatttatcggagtctccac |
31551236 |
T |
|
| Q |
301 |
cattgtttctaagcagttgttatctcccacaaaattctgaaacttgaataacaaaagaacattaagatcacatttttaagcatgatagtgcaatgaagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31551237 |
cattgtttctaagcagttgttatctcccacaaaattctgaaacttgaataacaaaagaacattaagatcacatttttaagcatgatagtgcaatgaagca |
31551336 |
T |
|
| Q |
401 |
gaggaacaag |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
31551337 |
gaggaacaag |
31551346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 34648427 - 34648282
Alignment:
| Q |
110 |
accttataattaaacctttctttctttttggctttttcatttaacaatgcttctacatcttctcttgtgaactctat-ta--caccataatccgatccag |
206 |
Q |
| |
|
||||| |||||||| || |||||| |||| | ||| ||||| ||||| || || ||||||||||||||||| ||||| || |||||||| || |||| |
|
|
| T |
34648427 |
accttgtaattaaatctgtctttccttttagatttctcattcaacaaagcctcaacatcttctcttgtgaaatctatgtagcttccataatcagaaccag |
34648328 |
T |
|
| Q |
207 |
cattgcttggaggagcactacttaggccaacatcgtgtccgccatt |
252 |
Q |
| |
|
|||||||||| |||| ||||||| | |||| ||| ||||| ||||| |
|
|
| T |
34648327 |
cattgcttggtggagtactacttggaccaagatcatgtccaccatt |
34648282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University