View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_12 (Length: 396)
Name: NF4114_high_12
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 45675709 - 45676065
Alignment:
| Q |
17 |
aatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccat |
116 |
Q |
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| T |
45675709 |
aatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttctttttcagacttgaattccat |
45675808 |
T |
|
| Q |
117 |
agattttttatttcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgct |
216 |
Q |
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| T |
45675809 |
agattttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgct |
45675908 |
T |
|
| Q |
217 |
tcgattcgtagaaagnnnnnnnnnnnnnngcatgtaacaaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcagttccttaa |
316 |
Q |
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||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45675909 |
tcgattcgtagaaagaaaa------------aaata--aaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcaattccttaa |
45675994 |
T |
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| Q |
317 |
ttattacaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctg |
387 |
Q |
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| T |
45675995 |
ttattacaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctg |
45676065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
| Q |
44 |
ctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttctt |
143 |
Q |
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| T |
37963188 |
ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt |
37963089 |
T |
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| Q |
144 |
ccaggtaactgagctgcaatctgcgaccacctgata |
179 |
Q |
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|| ||||| || ||||||||||| ||||| |||||| |
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| T |
37963088 |
cctggtaattgtgctgcaatctgagaccatctgata |
37963053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
| Q |
113 |
ccatagattttttatttcattgtctgttcttccaggtaa |
151 |
Q |
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| T |
16138163 |
ccatacattttttatttcattgtctgttcttccaggtaa |
16138201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 51044772 - 51044663
Alignment:
| Q |
68 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
167 |
Q |
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||||||||| |||| || | |||| |||||||||| |||||||||||| | |||||||| ||||| |||||||| || ||||| || | |||||| || |
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| T |
51044772 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga |
51044673 |
T |
|
| Q |
168 |
gaccacctga |
177 |
Q |
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| T |
51044672 |
gcccacctga |
51044663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
| Q |
119 |
attttttatttcattgtctgttcttccaggtaa |
151 |
Q |
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| T |
16127079 |
attttttatttcattgtctgttcttccaggtaa |
16127111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
| Q |
120 |
ttttttatttcattgtctgttcttccaggtaactgagctgcaat |
163 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53557754 |
ttttttatgtcattgtctgttcttccaggtaactgagcagcaat |
53557711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 20740369 - 20740400
Alignment:
| Q |
123 |
tttatttcattgtctgttcttccaggtaactg |
154 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20740369 |
tttatttcattgtctgttcttccaggtaactg |
20740400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 20732633 - 20732663
Alignment:
| Q |
123 |
tttatttcattgtctgttcttccaggtaact |
153 |
Q |
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| T |
20732633 |
tttatttcattgtctgttcttccaggtaact |
20732663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 34626408 - 34626517
Alignment:
| Q |
68 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
167 |
Q |
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| T |
34626408 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttga |
34626507 |
T |
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| Q |
168 |
gaccacctga |
177 |
Q |
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| T |
34626508 |
gcccacctga |
34626517 |
T |
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