View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_17 (Length: 306)
Name: NF4114_high_17
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 44837531 - 44837257
Alignment:
| Q |
15 |
caaaggatattaacaccaacatttgtgaatcaggtggagtactagttgccgaagttctatgttttgaaaggccggtgctcttggttttttatttataggt |
114 |
Q |
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| T |
44837531 |
caaaggatattaacaccaacatttgtgaatcaggtggagtactagttgccgaagttctatgttttgaaaggccggtgctcttggttttttatttataggt |
44837432 |
T |
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| Q |
115 |
tttcttgtaattgtaacaagattaaactcaattgacagtagtagttaatataaggtttattagttgtgggcttgggcttgaactaaaagcgaaagtgatt |
214 |
Q |
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| T |
44837431 |
tttcttgtaattgtaacaagattaaactcaattgtcagtagtagttaatataaggtttattagttgtgggcttgggcttgaactaaaagcgaaagtgatt |
44837332 |
T |
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| Q |
215 |
ggcttaattaatagtttaagtaggtgcactcggttattgtatttgtgcataacataatactatcaatctcacaat |
289 |
Q |
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| T |
44837331 |
ggcttaattaatagtttaagtaggtgcactcggttattgtatttgtgcataacataatactatcaatctcacaat |
44837257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 44862680 - 44862537
Alignment:
| Q |
31 |
caacatttgtgaatcaggtggagtactagttgccgaagttctatgttttgaaaggccggtgctcttggttttttatttataggttttcttgtaattgtaa |
130 |
Q |
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| T |
44862680 |
caacatctgtgaatcagggggagtgctagttgtcaaagttctatgttttgacaggtcggtgttctttgctttaaatttaaaggtt------tacttgtaa |
44862587 |
T |
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| Q |
131 |
caagattaaactcaattgacagtagtagttaatataaggtttattagttg |
180 |
Q |
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| T |
44862586 |
caagtttaagctcaatggaaagtattggtcaatataaggtttattagttg |
44862537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 44880457 - 44880332
Alignment:
| Q |
50 |
ggagtactagttgccgaagttctatgttttgaaaggccggtgctcttggttttttatttataggttttcttgtaattgtaacaagattaaactcaattga |
149 |
Q |
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||||||||||||| |||||||||||||||||| |||| |||| |||| ||||| ||||| ||| | || |||||||||||||| |||||| || |
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| T |
44880457 |
ggagtactagttgtcgaagttctatgttttgacaggctggtgttctttgttttaaatttaaaggct------tacatgtaacaagattaagctcaatgga |
44880364 |
T |
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| Q |
150 |
cagtagtagttaatataa-ggtttattagttg |
180 |
Q |
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|||| ||| |||||||| ||||||||||||| |
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| T |
44880363 |
aagtattaggtaatataatggtttattagttg |
44880332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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