View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4114_high_19 (Length: 294)
Name: NF4114_high_19
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 20338331 - 20338072
Alignment:
| Q |
20 |
gattggaggattctcgagcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338331 |
gattggaggattctcgagcaaacgaaaaacagtgaaggatacaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagta |
20338232 |
T |
|
| Q |
120 |
aggtgcaatttgatgaaattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagca |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338231 |
aggtgcaatttgatgaagttgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagca |
20338132 |
T |
|
| Q |
220 |
aatcggggatgtgctcgttaggaatgaattttggtgacgtgatggtaggacgctgtgatg |
279 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20338131 |
aatcggggatgtgctcgttaggaatgaatttcggtgacgtgatggtaggacgctgtgatg |
20338072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 20141484 - 20141743
Alignment:
| Q |
20 |
gattggaggattctcgagcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagta |
119 |
Q |
| |
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||||||||| || | |||||||||||||||||||||| || ||||||| ||| |||||| |||||||||||||||||| | || || |||||||||| |
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| T |
20141484 |
gattggagggttgtggagcaaacgaaaaacagtgaagaatataacattgagatgagaggtggatacaagtgtgaagtccgcattccttgaagatcgagta |
20141583 |
T |
|
| Q |
120 |
aggtgcaatttgatgaaattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagca |
219 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
20141584 |
aggtgcaatttgatgaagttgggattagagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaggaagcaaggaaagca |
20141683 |
T |
|
| Q |
220 |
aatcggggatgtgctcgttaggaatgaattttggtgacgtgatggtaggacgctgtgatg |
279 |
Q |
| |
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||||| ||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| |
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| T |
20141684 |
catcggtgatttgctcgttagggatgaattttggtggcatgatggtaggacgccgtgatg |
20141743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 20133982 - 20134241
Alignment:
| Q |
20 |
gattggaggattctcgagcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagta |
119 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || | || ||||||||||||| |
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| T |
20133982 |
gattggagggttctggagcaaacgaaaaacagtgaagaatacaacattgcgatcagaggtagatacaagtgtgaaatctgcattccatgcagatcgagta |
20134081 |
T |
|
| Q |
120 |
aggtgcaatttgatgaaattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagca |
219 |
Q |
| |
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|||||| |||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||| | ||| |||| |
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| T |
20134082 |
aggtgccatttgatgaaggtcggatcagagatgagagagtcatgtggcttactcaagcacctaaatcgaagaagagatttgacgggaaggagggaaagca |
20134181 |
T |
|
| Q |
220 |
aatcggggatgtgctcgttaggaatgaattttggtgacgtgatggtaggacgctgtgatg |
279 |
Q |
| |
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| | ||||||||| ||||||||| |||||||||||||| || |||||||||| ||||||| |
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| T |
20134182 |
agttggggatgtggtcgttaggattgaattttggtgacatgttggtaggacgttgtgatg |
20134241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 43 - 267
Target Start/End: Original strand, 20126827 - 20127051
Alignment:
| Q |
43 |
gaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagtaaggtgcaatttgatgaaattggg |
142 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||||||||||||| | |||||| | || || || |||||||| |||||||||||||| |||| |
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| T |
20126827 |
gaaaaacagtgaagcatagaacattgcgaccagaggtagatacaatagagaagtctgccttccttgatgaccgagtaagttgcaatttgatgaagatggg |
20126926 |
T |
|
| Q |
143 |
atcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttagga |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
20126927 |
atcagagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaagaagtaaagagagcaaatcggggatgtgctcgttagga |
20127026 |
T |
|
| Q |
243 |
atgaattttggtgacgtgatggtag |
267 |
Q |
| |
|
|||||||||||||||||| |||||| |
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| T |
20127027 |
atgaattttggtgacgtggtggtag |
20127051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 20351483 - 20351305
Alignment:
| Q |
36 |
agcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagtaaggtgcaatttgatga |
135 |
Q |
| |
|
|||||||||||||| ||||||| | |||||| ||| ||||||||||||||||| ||||| | || ||||||||||||||||||||||||||| | |
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|
| T |
20351483 |
agcaaacgaaaaactgtgaaggttaggacattgtcatcggaggtagatacaagtgtaaagtctgcattacgtgcagatcgagtaaggtgcaatttgacaa |
20351384 |
T |
|
| Q |
136 |
aattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
214 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
20351383 |
aggtgggactggagatgagagagtcatgcaacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagga |
20351305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 20375186 - 20375362
Alignment:
| Q |
37 |
gcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagtaaggtgcaatttgatgaa |
136 |
Q |
| |
|
|||||||||||| ||||| ||| |||||| |||||| ||||||||||| || |||||| || ||||||||||||||||||||||||||| || |
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|
| T |
20375186 |
gcaaacgaaaaattgtgaaagataggacattgtcatcagaagtagatacaagagtcaagtccatattacgtgcagatcgagtaaggtgcaatttgacaaa |
20375285 |
T |
|
| Q |
137 |
attgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagg |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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|
| T |
20375286 |
ggtgggactggagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagg |
20375362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 20361894 - 20362066
Alignment:
| Q |
44 |
aaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctttttgtgcagatcgagtaaggtgcaatttgatgaaattg--g |
141 |
Q |
| |
|
|||||| ||||||||| |||||| ||| ||||||||||||||||| ||||| | || |||||||||||||||||||||||| || || || | |
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| T |
20361894 |
aaaaactgtgaaggataggacattgttatcggaggtagatacaagtgtcaagtctacattacgtgcagatcgagtaaggtgcaattggacaaaggtgttg |
20361993 |
T |
|
| Q |
142 |
gatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
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|
| T |
20361994 |
tattggagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagggatttgacgggaagcaagga |
20362066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 20360491 - 20360396
Alignment:
| Q |
107 |
tgcagatcgagtaaggtgcaatttgatgaaattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgac |
202 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
20360491 |
tgcagatcaagtaaggtgcaatttgacaaaggtgagattggagatgagagagtcatgtgacttactcaagcacctaaatcgaagtagaaatttgac |
20360396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 20407523 - 20407458
Alignment:
| Q |
146 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaa |
211 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
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|
| T |
20407523 |
agagatgagagagtcatatgacttacttaagcacctaaatcgaaggagtgatttgacgggaagtaa |
20407458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 20442199 - 20442137
Alignment:
| Q |
146 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaag |
208 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||||||||| || ||| |||||||| ||||| |
|
|
| T |
20442199 |
agagatgagagagtcatatgacttacttaagcacctaaatcaaatgagtgatttgacgggaag |
20442137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 20139194 - 20139235
Alignment:
| Q |
161 |
atgtgacttactcaaacacctaaatcgaaggagagatttgac |
202 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
20139194 |
atgtgacttactcaagcacctaaatcaaaggagagatttgac |
20139235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 20423152 - 20423097
Alignment:
| Q |
146 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttga |
201 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||| |||||||||| ||||||| |
|
|
| T |
20423152 |
agagatgagagagtcatatgacttacttaagcacctgaatcgaaggaatgatttga |
20423097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 15960614 - 15960426
Alignment:
| Q |
20 |
gattggaggattctcgagcaaacgaaaaacagtgaaggatgcaacattgcgatcagaggtagatacaagtgtgaagtcctctt-tttgtgcagatcgagt |
118 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||| | | || | ||| |||||| ||||||| ||||| || ||| |||||| ||||||| | |
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|
| T |
15960614 |
gattggagggttttcgagcaaacgaaaaactgtgaaggttaaagcacaacaatctgaggtatatacaagagtgaaatc-tctagtttgtgaagatcgatt |
15960516 |
T |
|
| Q |
119 |
aaggtgcaatttgatgaaattgggatcagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaag |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||| ||||||| | |||||||||||| | ||||||||| || ||||| |
|
|
| T |
15960515 |
aaggtgcaatttgatgaagttgggatcagaaatgagggagttccatgacttatgtacacacctaaatcgtaagagagatttcacgggaag |
15960426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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