View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_22 (Length: 262)
Name: NF4114_high_22
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31458425 - 31458180
Alignment:
| Q |
1 |
cacttacagttcttgtaaggtggaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaaaaatagaaataattgg |
100 |
Q |
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| T |
31458425 |
cacttacatttcttgtaaggtggaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaaaaatagaaataattgg |
31458326 |
T |
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| Q |
101 |
aagttgagacttgagaaattg-nnnnnnnntgtgtgcatgtaaaagcatgcaaactaattaggaaaaattttatacagaatttttgaagaccatatgcct |
199 |
Q |
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| T |
31458325 |
aagttgagacttgagaaattgaaaaaaaaatgtgtgcatgtaaaagcatgcaaactaattaggaaaaaatttatacagaatttttgaagaccatatgcct |
31458226 |
T |
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| Q |
200 |
catacatacatagcataaagtaagaaaataaaacacataaatatat |
245 |
Q |
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| T |
31458225 |
catacatacatagcataaagtaagaaaataaaacacataaatatat |
31458180 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20057730 - 20057647
Alignment:
| Q |
1 |
cacttacagttcttgtaaggtggaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaa |
84 |
Q |
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| T |
20057730 |
cacttacagttcctccaagctagaaatatcaccaatttctgtgggaattggaccacttaatcggtttcccaaaagcgacctgaa |
20057647 |
T |
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