View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_31 (Length: 208)
Name: NF4114_high_31
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_31 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13778319 - 13778114
Alignment:
| Q |
1 |
tttcctttctcagtattagtaacgtccttcaaaacatcggtcttttatgacgttgggatctacgcaatttagtcttagaaatggggtttttccctttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13778319 |
tttcctttctcagtattagtaacgtccttcaaaacatcggtcttttatgacgttgggatctacgcaatttagtcttagaaatggggtttttccctttgta |
13778220 |
T |
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| Q |
101 |
attgttgctataggcaaacttctttgaattggacatttatttctgagcattagtactagtaatcctcttcacccattttgtaggtggagcattgtaatta |
200 |
Q |
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| T |
13778219 |
attgttgctataggcaaacttctttgaattggacatttatt--tgagcattagtactagtaatcctcttcacccattttgtaggttgagcattgtaatta |
13778122 |
T |
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| Q |
201 |
gactttct |
208 |
Q |
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|||||||| |
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| T |
13778121 |
gactttct |
13778114 |
T |
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Target: scaffold0183 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 14753 - 14950
Alignment:
| Q |
12 |
agtattagtaacgtccttcaaaacatcggtctttt-atgacgttgggatctacgcaatttagtcttagaaatggggtttttccctttgtaattgttgcta |
110 |
Q |
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|||||| |||| ||||||||||||||| | ||||| ||| |||||| ||||||| ||| | |||||| ||| | ||| ||||||||||||||||| | |
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| T |
14753 |
agtattggtaatgtccttcaaaacatcagcctttttatggcgttggagtctacgccattgaatcttagtcatgagatttctccctttgtaattgttgttg |
14852 |
T |
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| Q |
111 |
taggcaaacttctttgaattggacatttatttctgagcattagtactagtaatcctcttcacccattttgtaggtggagcattgtaattagactttct |
208 |
Q |
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| T |
14853 |
taggcgaatttctttgaatcagacgtttccttttgagcgttagtactagtaactttcttcacccactttacaggtggagtattgtaatttgactttct |
14950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 24970413 - 24970458
Alignment:
| Q |
141 |
ttctgagcattagtactagtaatcctcttcacccattttgtaggtg |
186 |
Q |
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| T |
24970413 |
ttctgagcattagtactggtaactctcttcacccattttgtaggtg |
24970458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 24970353 - 24970394
Alignment:
| Q |
88 |
ttttccctttgtaattgttgctataggcaaacttctttgaat |
129 |
Q |
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| T |
24970353 |
ttttccctttgtaattattgctataggcgaatttctttgaat |
24970394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 18453709 - 18453624
Alignment:
| Q |
43 |
ttttatgacgttgggatctacgcaatttagtcttagaaatggggtttttccctttgtaattgttgctataggcaaacttctttgaa |
128 |
Q |
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|||| ||||||||| |||||||| | | ||| || | ||||| ||||| || |||||||||||| |||||||||| ||||||||| |
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| T |
18453709 |
ttttctgacgttggaatctacgccactaagttttggtcatgggatttttacccttgtaattgttgttataggcaaatttctttgaa |
18453624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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