View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_5 (Length: 473)
Name: NF4114_high_5
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 9412229 - 9412672
Alignment:
| Q |
14 |
aacctgtgtacagtagcagaagtttctgtcagtttcatttcaattattagtagcataacatagcaacaacatttaaaagaggcatagcagcaaggtttca |
113 |
Q |
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| T |
9412229 |
aacctgtatacagtagcagaagtttctgtcagtttcatttcaattattagtagcataacatagcaacaacatttaaaagaggcatagcagcaaggtttca |
9412328 |
T |
|
| Q |
114 |
aaaacaagttcgagaccgcaatcttgctgcagcatcattgcttttttatattttcacaacaacaattgaagttgcatcagtcacatttactatgattctc |
213 |
Q |
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| T |
9412329 |
aaaacaagttcgacaccgcaatcttgctgcagcatcattgcttttttatattttcacaacaacaattgaagttgcatcagtcacatttactatgattctc |
9412428 |
T |
|
| Q |
214 |
tgcaatatcaatgattgcaatagtatccacagccacaattcaaaaccatgtatattagtagtttatagtgtaagaaactactcatgaacaacagttgaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9412429 |
tgcaatatcaatgattgcaatagtatccacagccacaattcaaaaccttggatattagtagtttatagtttaagaaactactcatgaacaacagttgaag |
9412528 |
T |
|
| Q |
314 |
ttgcgtcaaccatatttgactgtgattttctgcaatatcaattatcacgacacaactgtaacagttaccgcgtatgcaatttaaaatattacatgtaaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9412529 |
ttgcgtcaaccatatttgactgtgattttctgcaatatcaattatcgcgacacaactgtaacagttaccgcgtatgcaatttaaaatattacatgtaaac |
9412628 |
T |
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| Q |
414 |
aaatcatgaacatgtaatttcatacctgaagggttccaaggcag |
457 |
Q |
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| T |
9412629 |
aaatcatgaacatgtaatttcatacctgaagggttccaaggcag |
9412672 |
T |
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