View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_high_6 (Length: 439)
Name: NF4114_high_6
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 30956862 - 30956451
Alignment:
| Q |
18 |
tctctcacaataaaagcaacaacttctgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30956862 |
tctctcacaataaaagcaacaacttctgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctg |
30956763 |
T |
|
| Q |
118 |
agcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30956762 |
agcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaa |
30956663 |
T |
|
| Q |
218 |
aaatgaatacttcaaagaaaatcatggaataaaataaatggtaacaattacggcagtttggaaccactgtgaaagccatgaacgaagtcaaaaactgcaa |
317 |
Q |
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| T |
30956662 |
aaatgaatacttcaaagaaaatcatggaataaaataaatagtaacaattacggcagtttggaaccactgtgaaagccatgaacgaagtcaaaaactgcaa |
30956563 |
T |
|
| Q |
318 |
actacaaacagccgcagaattccctcaaggcgcttcttttagtggttggctctaaccaccgcaaatgcggcaggtgcacacacgctgcaaatgacgttcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30956562 |
actacaaacagccgcagaattccctcaaggcgcttcttttagtggttggctctaaccaccgcaaatgcggcaggtgcacacacgctgcaaatgacgttcc |
30956463 |
T |
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| Q |
418 |
aaaatcagtatt |
429 |
Q |
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| T |
30956462 |
aaaatcagtatt |
30956451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 44 - 352
Target Start/End: Complemental strand, 30946597 - 30946292
Alignment:
| Q |
44 |
tgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacat |
143 |
Q |
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||||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||| ||| |||| |||||||||||||||| | ||||||||| |
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| T |
30946597 |
tgtcgaccgtatatgcttgtaacctttaattctattttgtatttcattcttggtattgtaaatg--taaa-ctgagcaaattttggttttgtcatgacat |
30946501 |
T |
|
| Q |
144 |
aggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatg |
243 |
Q |
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||||| ||||||||||| ||| |||| ||||||||||| ||||| |||||| ||||||||||| | ||||| |||||||||||||| ||||||| | | |
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| T |
30946500 |
aggcactaaactcctaactggttgacatgattgaccttaaattgttgtccttatcttgctaccctaagtggtaaaaatgaatacttaaaagaaattattt |
30946401 |
T |
|
| Q |
244 |
gaataaaataaatggtaacaattacggcagtttggaaccactgtgaaagccatgaacgaagtcaaaaactgcaaactacaaacagccgcagaattccctc |
343 |
Q |
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|||||||||||||| |||||||| |||||||||||||| | | ||| ||||||| | |||||||| || ||||| || |||||||||| |||| ||||| |
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| T |
30946400 |
caataaaataaatggcaacaattatggcagtttggaaccgccgcgaatgccatgaccaaagtcaaataccgcaaaatataaacagccgcggaatgccctc |
30946301 |
T |
|
| Q |
344 |
aaggcgctt |
352 |
Q |
| |
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||||||| |
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| T |
30946300 |
ttggcgctt |
30946292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 30931893 - 30931760
Alignment:
| Q |
52 |
gtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatt-tcatgacataggcagt |
150 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||| || |||| ||| |||||| |||||||||||| |||| || ||||||||||| |
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| T |
30931893 |
gtatatacatgtaaccttgcagcttattttgtatttcattctatgtattg--taaatgtaaagcaaagcaaattttggcgattgtccagacataggcagc |
30931796 |
T |
|
| Q |
151 |
aaactcctaaatgggtgacgtgattgaccttgaatt |
186 |
Q |
| |
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|||||||||| || |||| ||||| |||||||||| |
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| T |
30931795 |
aaactcctaactgcatgacatgatttaccttgaatt |
30931760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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