View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_11 (Length: 425)
Name: NF4114_low_11
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 33431400 - 33431147
Alignment:
| Q |
22 |
aattaatccatcatccacacttaacagttttgacggcagaaacattgaaaattatggcacgtgccactaattaagtgtgctttgttcttgcagtggtcat |
121 |
Q |
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| T |
33431400 |
aattaatccatcatccacacttaacagttttgagtgcagaaacattgaaagttatggcacgtgccactaattaagtgtgctttgttcttgcagtggtcat |
33431301 |
T |
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| Q |
122 |
cacagctaccttccgtgaagcatggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatccaagtacta |
221 |
Q |
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| T |
33431300 |
cacagctaccttccgtgaagcatggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatccaagtacca |
33431201 |
T |
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| Q |
222 |
ccaatatttattaaaacattatatgtagatattaatttgctaatcaaaaccttta |
276 |
Q |
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| T |
33431200 |
ccaatatttattagaacattatatgtagatatt-atttgctaatcaaaaccttta |
33431147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 276 - 414
Target Start/End: Complemental strand, 33430850 - 33430712
Alignment:
| Q |
276 |
agtaaggaacaataaactaaagtaataataatagtttatccttgttattttaataattagaagggtaaaaaatttaaaatagagacataagaaataaatt |
375 |
Q |
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| T |
33430850 |
agtaaggaacaataaactaaagtaataataatagtttatccttgttattttattaattagaagggtaaaaaatttaaaatagagacataagaaataaatt |
33430751 |
T |
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| Q |
376 |
gatatataattttgatgtctttagggtttaggccttctt |
414 |
Q |
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| T |
33430750 |
gatatattattttgatgtctttagggtttaggccttctt |
33430712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 33435509 - 33435437
Alignment:
| Q |
139 |
aagcatggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcat |
211 |
Q |
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| T |
33435509 |
aagcatggtcccctgtatttatcagccaaattctcacaagtcttagcttcagtcaccacaatttcttctgcat |
33435437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 33424729 - 33424657
Alignment:
| Q |
142 |
catggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatcca |
214 |
Q |
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| T |
33424729 |
catggtcccctgaatgtaccagccaaattctcacaagtgtttgcctcagtcaccacaatttcttctgcatcca |
33424657 |
T |
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