View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_13 (Length: 379)
Name: NF4114_low_13
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 1443321 - 1442957
Alignment:
| Q |
1 |
ctaaagactttattcttgtattctgattatttaaagagtcaaataaatcaatttaattttaagaaaagttttctctctataaacacattgtacttatttt |
100 |
Q |
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| T |
1443321 |
ctaaagactttattcttgtattctgattatttaaagagtcaaataaatcaatttaattttaagaaatgttttttctctataaacacattgtacttatttt |
1443222 |
T |
|
| Q |
101 |
tgctactaatttattcaaagtggtaattttctagttacttcatacatgaattgcaatataaattattttatggcgctctaaaacataggttattatttca |
200 |
Q |
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| T |
1443221 |
ttctactaatttattcaaagcggtaattttctagttacttcatacatgaattgcaatataaattattttatggcgctcgaaaacataggttattatttca |
1443122 |
T |
|
| Q |
201 |
taatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggtatatcaagcaaatttggtaaccatctcagagttgggctaag |
300 |
Q |
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| T |
1443121 |
taatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggtatatcaagcaaatttggtaaccatctcagagttgggctaag |
1443022 |
T |
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| Q |
301 |
tggttaagaaatttatcaaccctaaattatgtcacctcacatctcttatttatgatgatctttct |
365 |
Q |
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| T |
1443021 |
tggttaagaaatttatcaaccctaaattatgtcacctcacatctcttatttatgatgatctttct |
1442957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 364
Target Start/End: Complemental strand, 1451208 - 1450893
Alignment:
| Q |
71 |
ttctctctataaacacattgtactt-atttttgctactaatttattcaaagtggtaattttctagttacttcatacatgaattgcaatataaattatttt |
169 |
Q |
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| T |
1451208 |
ttctctctattaacatattttgcttgatctttactactaacttattcaaagtggcaattttctagctaattcatacatgaattgcaatataaacattttt |
1451109 |
T |
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| Q |
170 |
atggcgctctaaaacata--ggttattatttcat---aatatacaactatctttctctcatcttccttccagtgagacgtgtctcaagatgtggt----- |
259 |
Q |
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| T |
1451108 |
atggcactctaaaacacaaaggttataatttcttcgtaatatgcaactatgtttctctcatcttccttctagtgtcctgtgtctcaagatgtggtttgtg |
1451009 |
T |
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| Q |
260 |
---atatcaagcaaatttggtaaccatctca-----gagttgggctaagtggt--taagaaatttatcaaccctaaattatgtcacc-tcacatctctta |
348 |
Q |
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| T |
1451008 |
aacatatcaagcaaatttggtaaccatctcaaatgcaatttggcctaagtggtcagaaataattgatcaaccctaaagtatgtcaccttaacatctctta |
1450909 |
T |
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| Q |
349 |
tttatgatgatctttc |
364 |
Q |
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| T |
1450908 |
tttatgatgatctttc |
1450893 |
T |
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