View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4114_low_2 (Length: 536)
Name: NF4114_low_2
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 31458144 - 31457649
Alignment:
| Q |
18 |
atgagagccctccaagattctttggaattgagccatttatataattcctagtgagatcactgctcagtataaaatatcaattagattcttttaaaaataa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31458144 |
atgagagccctccaagactctttggaattgagccatttatataattcctagtgagatcactgctcagtataaaatatcaattagattctttttaaaataa |
31458045 |
T |
|
| Q |
118 |
taattataattaatgtcatattcttttgaatttgatgatgttaatagtttttgcactttcccataaatnnnnnnnnnnnnnnnnn---tacatatgtaaa |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31458044 |
taatgataattaatgtcatattcttttgaatttgatgatgttaatagtttttgcactttcccataaatataaaaaataaaataaaaaatacatatgtaaa |
31457945 |
T |
|
| Q |
215 |
aatcatactaaaatattgtaatcataggttattaggagataattaaattaacagcttcagttattagtttatcagttagttaaagtttctagttagaaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457944 |
aatcatactaaaatattgtaatcataggttattaggagataattaaattaacagcttcagttattagtttatcagttagttaaagtttctagttagaaga |
31457845 |
T |
|
| Q |
315 |
ggttagttcattatcattataatagcccagtattttcaattcctaatcttctataaaatgcacatacaatattcatattttgctgacatcttccacactt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457844 |
ggttagttcattatcattataatagcccagta-tttcaattcctaatcttctataaaatgcacacacaatattcatattttgctgacatcttccacactt |
31457746 |
T |
|
| Q |
415 |
tcctattatacaaatgtgtgccgaactatgactctgatacgacatgttggggagtctagaaaagcttttggagcagcaatatgctaatgatgtgaccact |
514 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31457745 |
tcctactatacaaatgtgtgccgaactatgactctgatacgacatgttggggagtctagaaaagcttttgg-------atatgctaatgatgcgaccact |
31457653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University