View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_25 (Length: 250)
Name: NF4114_low_25
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 45683998 - 45684156
Alignment:
| Q |
93 |
gattccataaatagtaaccnnnnnnnntgcaggtgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaa-gcacaaagcgatggatattta |
191 |
Q |
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| T |
45683998 |
gattccataaatagtaaccaaaaaaaatgcaggcgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaaagcacaaagcgatggatattta |
45684097 |
T |
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| Q |
192 |
tgtctgataaatattatagaatacattaaatcaaaggatgagttggtaaacaattttat |
250 |
Q |
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| T |
45684098 |
tgtctgataaatattatagaatacattagatcaaaggatgagttggtaaacaattttat |
45684156 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 45683855 - 45683917
Alignment:
| Q |
10 |
aagaatattacaacaaatgtttctaattagcacatgaaagtcgatggaaacaacatcgaagtg |
72 |
Q |
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| T |
45683855 |
aagaagattacaacaaacgtttctgattagcacatgaaagtcgatggaaacaacatctaagtg |
45683917 |
T |
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