View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4114_low_26 (Length: 241)

Name: NF4114_low_26
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4114_low_26
NF4114_low_26
[»] scaffold0012 (1 HSPs)
scaffold0012 (24-82)||(48744-48802)
[»] chr2 (13 HSPs)
chr2 (24-82)||(41421440-41421498)
chr2 (24-82)||(2629867-2629925)
chr2 (24-82)||(10313447-10313505)
chr2 (19-82)||(6376715-6376778)
chr2 (19-82)||(9740003-9740066)
chr2 (24-63)||(10590739-10590778)
chr2 (15-82)||(38203938-38204005)
chr2 (24-82)||(5192257-5192315)
chr2 (24-82)||(6732151-6732209)
chr2 (24-70)||(10590284-10590330)
chr2 (24-82)||(26400866-26400924)
chr2 (24-70)||(36450208-36450254)
chr2 (18-70)||(27251985-27252037)
[»] chr8 (18 HSPs)
chr8 (15-70)||(38389882-38389937)
chr8 (24-82)||(35024827-35024884)
chr8 (24-82)||(13175903-13175960)
chr8 (24-82)||(16975656-16975714)
chr8 (24-82)||(21142239-21142297)
chr8 (25-82)||(27751621-27751679)
chr8 (24-70)||(5728683-5728729)
chr8 (24-82)||(22199628-22199686)
chr8 (24-82)||(23769439-23769497)
chr8 (24-82)||(23796896-23796954)
chr8 (24-70)||(29197713-29197759)
chr8 (24-82)||(42787653-42787711)
chr8 (18-55)||(2289031-2289068)
chr8 (14-63)||(35213370-35213419)
chr8 (24-64)||(1030770-1030810)
chr8 (23-63)||(13349281-13349321)
chr8 (15-63)||(23767649-23767697)
chr8 (18-70)||(45434492-45434544)
[»] chr7 (23 HSPs)
chr7 (17-70)||(41014001-41014054)
chr7 (18-70)||(30903634-30903686)
chr7 (24-70)||(18803823-18803869)
chr7 (24-70)||(28036579-28036625)
chr7 (25-70)||(19228279-19228324)
chr7 (24-64)||(584860-584900)
chr7 (24-82)||(2443678-2443736)
chr7 (24-82)||(2688125-2688183)
chr7 (24-82)||(8721582-8721640)
chr7 (24-70)||(12229667-12229713)
chr7 (24-82)||(24518490-24518548)
chr7 (24-82)||(29553140-29553198)
chr7 (24-82)||(32457174-32457232)
chr7 (24-70)||(40367136-40367182)
chr7 (17-82)||(11290553-11290618)
chr7 (24-65)||(15076564-15076605)
chr7 (17-54)||(18564269-18564306)
chr7 (24-61)||(40366689-40366726)
chr7 (17-70)||(43301936-43301989)
chr7 (30-82)||(4910931-4910983)
chr7 (18-70)||(13752405-13752457)
chr7 (26-82)||(15648561-15648617)
chr7 (18-54)||(24463710-24463746)
[»] chr6 (8 HSPs)
chr6 (24-81)||(767785-767842)
chr6 (19-70)||(7683936-7683987)
chr6 (16-70)||(7575670-7575724)
chr6 (24-70)||(13691350-13691396)
chr6 (24-81)||(19680888-19680945)
chr6 (18-70)||(1336530-1336582)
chr6 (14-82)||(17544861-17544929)
chr6 (18-70)||(33599884-33599936)
[»] chr4 (16 HSPs)
chr4 (23-80)||(35683742-35683798)
chr4 (18-63)||(34373575-34373620)
chr4 (15-82)||(26487781-26487848)
chr4 (15-70)||(29771992-29772047)
chr4 (24-83)||(39911041-39911100)
chr4 (24-82)||(29965278-29965336)
chr4 (24-82)||(36703849-36703907)
chr4 (41-82)||(353649-353690)
chr4 (14-63)||(1309755-1309803)
chr4 (17-82)||(19037384-19037449)
chr4 (17-70)||(19689444-19689497)
chr4 (24-81)||(30031925-30031982)
chr4 (24-65)||(43067232-43067273)
chr4 (24-64)||(3460301-3460341)
chr4 (24-64)||(5497111-5497151)
chr4 (18-70)||(9369950-9370002)
[»] chr3 (33 HSPs)
chr3 (24-82)||(30577671-30577729)
chr3 (24-82)||(35460073-35460131)
chr3 (24-82)||(43887156-43887214)
chr3 (18-70)||(19158849-19158901)
chr3 (18-74)||(34330765-34330821)
chr3 (24-72)||(46887777-46887825)
chr3 (15-70)||(43081586-43081641)
chr3 (15-70)||(47742719-47742774)
chr3 (24-71)||(49839132-49839179)
chr3 (24-82)||(160964-161022)
chr3 (18-64)||(7923246-7923292)
chr3 (24-70)||(17380275-17380321)
chr3 (24-82)||(17551941-17551999)
chr3 (24-70)||(19114065-19114111)
chr3 (24-82)||(28588881-28588939)
chr3 (24-70)||(29458812-29458858)
chr3 (24-70)||(31310895-31310941)
chr3 (24-70)||(33463275-33463321)
chr3 (24-70)||(33805960-33806006)
chr3 (24-82)||(36181385-36181443)
chr3 (24-82)||(49083757-49083815)
chr3 (24-82)||(52169549-52169607)
chr3 (24-82)||(52253061-52253119)
chr3 (24-70)||(53277070-53277116)
chr3 (25-82)||(51335769-51335826)
chr3 (17-82)||(52336874-52336938)
chr3 (17-53)||(6134599-6134635)
chr3 (18-70)||(23804012-23804064)
chr3 (24-72)||(26859767-26859815)
chr3 (14-70)||(46710225-46710281)
chr3 (24-72)||(46835642-46835690)
chr3 (18-82)||(48380995-48381059)
chr3 (21-64)||(55320017-55320061)
[»] chr1 (22 HSPs)
chr1 (24-82)||(14422623-14422681)
chr1 (24-82)||(31275740-31275798)
chr1 (17-82)||(9593260-9593325)
chr1 (18-82)||(36042318-36042382)
chr1 (15-63)||(37848157-37848205)
chr1 (15-70)||(2969677-2969732)
chr1 (24-70)||(4051446-4051492)
chr1 (24-70)||(17337971-17338017)
chr1 (24-70)||(18104307-18104353)
chr1 (24-70)||(35864314-35864360)
chr1 (24-82)||(41885499-41885557)
chr1 (25-70)||(1053297-1053342)
chr1 (25-82)||(26821227-26821284)
chr1 (17-82)||(27640974-27641039)
chr1 (17-70)||(35259581-35259634)
chr1 (24-53)||(42101590-42101619)
chr1 (18-82)||(4618140-4618204)
chr1 (26-70)||(33417942-33417986)
chr1 (24-72)||(34941571-34941619)
chr1 (18-70)||(38163361-38163413)
chr1 (18-70)||(47843875-47843927)
chr1 (24-64)||(51680856-51680896)
[»] chr5 (17 HSPs)
chr5 (21-70)||(19103895-19103944)
chr5 (13-82)||(39025659-39025728)
chr5 (15-70)||(12331120-12331175)
chr5 (24-82)||(3637455-3637513)
chr5 (24-82)||(5244295-5244352)
chr5 (24-70)||(11374973-11375019)
chr5 (24-82)||(11690739-11690797)
chr5 (24-70)||(42661347-42661393)
chr5 (15-64)||(4000962-4001011)
chr5 (25-82)||(14523587-14523644)
chr5 (17-70)||(26910448-26910501)
chr5 (17-82)||(34448488-34448553)
chr5 (24-64)||(16218431-16218471)
chr5 (14-70)||(26020292-26020348)
chr5 (18-70)||(28137371-28137423)
chr5 (14-70)||(30896202-30896258)
chr5 (24-64)||(34598151-34598191)
[»] scaffold0011 (1 HSPs)
scaffold0011 (15-70)||(225117-225172)
[»] scaffold0508 (1 HSPs)
scaffold0508 (24-70)||(6723-6769)
[»] scaffold0147 (1 HSPs)
scaffold0147 (24-64)||(39799-39839)
[»] scaffold0022 (1 HSPs)
scaffold0022 (14-70)||(65320-65376)


Alignment Details
Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 48744 - 48802
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||    
48744 gttaaatatgtttttgatccctataaatatattaacttttcgttttaattcctctaaaa 48802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 41421440 - 41421498
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||    
41421440 gttaaatatgtttttaatccttataaatatatcaacttttcgttttaattcttctaaaa 41421498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2629867 - 2629925
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||| ||| |||||||    
2629867 gttaaatatgtttttgatccctataaatatatcaacttttcgttttagttcctctaaaa 2629925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 10313505 - 10313447
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||||||||||||||  ||||||||| |||| ||| |||||||    
10313505 gttaaatatgtttttgatccttataaatataccaacttttcgttttagttcctctaaaa 10313447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 6376778 - 6376715
Alignment:
19 ttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||| ||||||||||| |||| ||||||||||||||| ||||||||  |||| ||| |||||||    
6376778 ttagggttaaatatgtttttggtccttataaatatatcaacttttcattttagttcctctaaaa 6376715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9740066 - 9740003
Alignment:
19 ttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||| ||||||||||| |||| ||| ||||||||||| ||||||||  |||||||| |||||||    
9740066 ttagggttaaatatgtttttgctccctataaatatatcaacttttcattttaattcctctaaaa 9740003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 10590778 - 10590739
Alignment:
24 gttaaatatgtatttgatccttataaatatattaactttt 63  Q
    ||||||||||| |||| |||||||||||||||||||||||    
10590778 gttaaatatgtttttggtccttataaatatattaactttt 10590739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 38204005 - 38203938
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||| ||||||||||| |||| ||| ||||||||| | ||||||||| |||| | |||||||||    
38204005 ttttttagcgttaaatatgtttttggtccctataaatatgtcaacttttcgttttagtccttctaaaa 38203938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 5192315 - 5192257
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||||| ||| |||||    
5192315 gttaaatatgtttttggtccctataaatatatcaacttttcgttttaatccttgtaaaa 5192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6732209 - 6732151
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||| ||||||||||| |||||| | |||||||    
6732209 gttaaatatgtttttggtccctataaatatgttaacttttcgttttaatccctctaaaa 6732151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 10590284 - 10590330
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||| |||| |||||| ||||    
10590284 gttaaatatgtttttgatccttataaatatgttaatttttcgtttta 10590330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 26400866 - 26400924
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||| ||||||||||||  ||||||||  |||||||| |||||||    
26400866 gttaaatatgtttttgatacttataaatataccaacttttcattttaattcctctaaaa 26400924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 36450208 - 36450254
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||  ||||||||| ||||    
36450208 gttaaatatgtttttgatccttataaatataccaacttttcgtttta 36450254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 27252037 - 27251985
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
27252037 tttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 27251985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 38389937 - 38389882
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||    
38389937 ttttttagggttaaatatgtttttgatccttataaatatactaacttttcgtttta 38389882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 35024884 - 35024827
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||    
35024884 gttaaatatgttttt-atccttataaatatactaacttttcgttttaattcttctaaaa 35024827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 13175903 - 13175960
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||| ||| |||||||    
13175903 gttaaatatgtttttgatccttataaatata-taacttttcgttttagttcctctaaaa 13175960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 16975656 - 16975714
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| |||||| | |||||||    
16975656 gttaaatatgtttttggtccctataaatatattaacttttcgttttaatccctctaaaa 16975714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 21142297 - 21142239
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||| | |||| ||| ||||||||||||||||||||| |||| |||||||||||    
21142297 gttaaatatatttttggtccatataaatatattaacttttcgttttagttcttctaaaa 21142239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 27751679 - 27751621
Alignment:
25 ttaaatatgtatttgatccttataaa-tatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||| ||| ||||||||||| ||||||||||||||| |||||| |||||||||    
27751679 ttaaatatgttttttatccttataaaatatattaacttttcgttttaatccttctaaaa 27751621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 5728683 - 5728729
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
5728683 gttaaatatgtttttgatccctataaatatatcaacttttcgtttta 5728729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 22199628 - 22199686
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||||||||||||||  ||||||||| |||||| | |||||||    
22199628 gttaaatatgtttttggtccttataaatataccaacttttcgttttaatccctctaaaa 22199686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 23769439 - 23769497
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||| | ||||||||||| ||||||||| |||| ||| |||||||    
23769439 gttaaatatgtttttgattcctataaatatatcaacttttcgttttagttcctctaaaa 23769497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 23796954 - 23796896
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||||||||||||| | ||||||||| |||| ||| |||||||    
23796954 gttaaatatgtttttggtccttataaatatgtcaacttttcgttttagttcctctaaaa 23796896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29197759 - 29197713
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||    
29197759 gttaaatatgtttttgatccctataaatatatcaacttttcagttta 29197713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 42787653 - 42787711
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||  |||||||||||||| |||||||| | |||||| |||||||||    
42787653 gttaaatatgtttttagtccttataaatatactaactttttgttttaatccttctaaaa 42787711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2289068 - 2289031
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatat 55  Q
    ||||| ||||||||||| ||||||||||||||||||||    
2289068 tttagggttaaatatgtttttgatccttataaatatat 2289031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 35213370 - 35213419
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    ||||||||| ||||||||||| |||| ||||||||||||||  |||||||    
35213370 attttttagggttaaatatgtttttggtccttataaatatacaaactttt 35213419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1030770 - 1030810
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
1030770 gttaaatatgtttttgatccttataaatataccaacttttc 1030810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 13349281 - 13349321
Alignment:
23 tgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
13349281 tgttaaatatgtttttggtccttataaatatatcaactttt 13349321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23767697 - 23767649
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    |||||| ||||||||||||| |||| | | |||||||||||||||||||    
23767697 tttttttgtgttaaatatgtttttggtgcctataaatatattaactttt 23767649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 45434492 - 45434544
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||||||||||| ||| ||||||||| ||||    
45434492 tttagggttaaatatgtttttggtccttataaatgtatcaacttttcgtttta 45434544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 41014054 - 41014001
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||    
41014054 ttttagggttaaatatgtttttggtccttataaatatattaacttttcgtttta 41014001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30903686 - 30903634
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||    
30903686 tttagggttaaatatgtttttgatccctataaatatattaacttttcgtttta 30903634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 18803869 - 18803823
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||    
18803869 gttaaatatgtttttgatccttataaatatatcaacttttcgtttta 18803823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 28036625 - 28036579
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||    
28036625 gttaaatatgtttttgatccttataaatatataaacttttcgtttta 28036579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 19228279 - 19228324
Alignment:
25 ttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||    
19228279 ttaaatatgtttttgatccttataaatatatcaacttttcgtttta 19228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 584860 - 584900
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
584860 gttaaatatgtttttggtccttataaatatattaacttttc 584900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 2443736 - 2443678
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||||||||||| | |||| | |||||||||    
2443736 gttaaatatgtttttggtccctataaatatattaactttttgttttagtccttctaaaa 2443678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2688125 - 2688183
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||| ||||||||||| ||||||| | |||| | |||||||||    
2688125 gttaaatatgtttttgatccctataaatatatcaactttttgttttagtccttctaaaa 2688183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 8721582 - 8721640
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||||| | |||||||    
8721582 gttaaatatgtttttggtccctataaatatatcaacttttcgttttaatccctctaaaa 8721640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12229667 - 12229713
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||  ||||||||| ||||    
12229667 gttaaatatgtttttgatccttataaatataccaacttttcgtttta 12229713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 24518490 - 24518548
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||| ||||||||||| ||||||| | |||||| | |||||||    
24518490 gttaaatatgtttttgatccctataaatatatcaactttttgttttaatccctctaaaa 24518548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 29553198 - 29553140
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||  ||||||||| |||| |||| | ||||||||||||||||    
29553198 gttaaatatgtttttgatctctataaatatgttaattttttgttttaattcttctaaaa 29553140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 32457232 - 32457174
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| |||||||||||||| |||||||||  |||| ||| |||||||    
32457232 gttaaatatgtttttggtccttataaatatactaacttttcattttagttcctctaaaa 32457174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 40367182 - 40367136
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||    
40367182 gttaaatatgtttttggtccatataaatatattaacttttcgtttta 40367136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 11290618 - 11290553
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||||| |||| ||| ||||||||| | ||||||||| |||||| | |||||||    
11290618 ttttagggttaaatatgtttttggtccctataaatatgtcaacttttcgttttaatccctctaaaa 11290553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15076605 - 15076564
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcg 65  Q
    ||||||||||| |||| ||||||||||||||| |||||||||    
15076605 gttaaatatgtttttggtccttataaatatatcaacttttcg 15076564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 18564269 - 18564306
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatata 54  Q
    |||||| ||||||||||| |||||||||||||||||||    
18564269 ttttagggttaaatatgtttttgatccttataaatata 18564306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 40366689 - 40366726
Alignment:
24 gttaaatatgtatttgatccttataaatatattaactt 61  Q
    ||||||||||| |||| |||||||||||||||||||||    
40366689 gttaaatatgtttttggtccttataaatatattaactt 40366726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 43301989 - 43301936
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
43301989 ttttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 43301936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 4910931 - 4910983
Alignment:
30 tatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||| ||| |||| ||||||||||| ||||||||  ||||||||||||||||    
4910931 tatgttttttatccctataaatatatcaacttttcattttaattcttctaaaa 4910983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13752457 - 13752405
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||  ||||||||||||||    
13752457 tttagggttaaatatgtttttgttccctataaatataccaacttttcggttta 13752405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 15648617 - 15648561
Alignment:
26 taaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||||||||  | ||||||| ||||||||||||| |||||||  |||||||    
15648617 taaatatgtatttgaatcctataaatgtattaacttttcgttttaatttctctaaaa 15648561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 24463746 - 24463710
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatata 54  Q
    ||||| ||||||||||| |||||||||||||||||||    
24463746 tttagggttaaatatgtttttgatccttataaatata 24463710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 767785 - 767842
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaa 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||| | ||||||    
767785 gttaaatatgtttttggtccttataaatatattaacttttcgttttaatccctctaaa 767842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7683987 - 7683936
Alignment:
19 ttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| ||||    
7683987 ttagcgttaaatatgtttttgatccctataaatatgttaacttttcgtttta 7683936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 7575670 - 7575724
Alignment:
16 tttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||| ||||||||||| |||| ||| |||||||||| |||||||||| ||||    
7575670 tttttagggttaaatatgtttttggtccctataaatatactaacttttcgtttta 7575724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 13691350 - 13691396
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||| | |||||||||||||||||||| ||||||||| ||||    
13691350 gttaaatatatttttgatccttataaatatatcaacttttcgtttta 13691396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 19680945 - 19680888
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaa 81  Q
    ||||||||||| |||| ||| |||||||||| |||||||||| |||||| | ||||||    
19680945 gttaaatatgtttttggtccctataaatatactaacttttcgttttaatccctctaaa 19680888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 1336530 - 1336582
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
1336530 tttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 1336582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 17544861 - 17544929
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||| |||| ||||||||||| |||||||| ||||||||||  ||||||||  |||| ||| |||||||    
17544861 atttattagggttaaatatgtttttgatccctataaatataccaacttttcactttagttcctctaaaa 17544929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 33599936 - 33599884
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||||||| ||||||||||  ||||||||| ||||    
33599936 tttagggttaaatatgtttttgatccctataaatataccaacttttcgtttta 33599884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 35683798 - 35683742
Alignment:
23 tgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaa 80  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
35683798 tgttaaatatgt-tttgatccttataaatatattaacttttcattttaatttttctaa 35683742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34373620 - 34373575
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||    
34373620 tttagggttaaatatgtttttgatccctataaatatattaactttt 34373575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 26487781 - 26487848
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||| ||| ||||||||||| |||| ||| ||||||||||| ||||||||  |||||| |||||||||    
26487781 ttttatagggttaaatatgtttttggtccctataaatatatcaacttttcattttaatccttctaaaa 26487848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 29772047 - 29771992
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
29772047 ttttttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 29771992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 39911100 - 39911041
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaac 83  Q
    ||||||||||| |||| ||| |||||||||| |||||||||| |||| ||| ||||||||    
39911100 gttaaatatgtttttggtccctataaatatactaacttttcgttttagttcctctaaaac 39911041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 29965336 - 29965278
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||| ||| |||||||    
29965336 gttaaatatgtttttggtccctataaatatatcaacttttcgttttagttcctctaaaa 29965278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 36703907 - 36703849
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||| | |||||||||    
36703907 gttaaatatgtttttggtccctataaatatatcaacttttcgttttagtccttctaaaa 36703849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 353690 - 353649
Alignment:
41 tccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||||||||||||||||| |||| ||| |||||||    
353690 tccttataaatatattaacttttcgttttagttcctctaaaa 353649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 1309803 - 1309755
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| |||||||    
1309803 attttttag-gttaaatatgtttttggtccttataaatatatcaactttt 1309755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19037384 - 19037449
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||||| |||||||| ||||||||| | ||||||||  |||| | |||||||||    
19037384 ttttagggttaaatatgtttttgatccctataaatatgtcaacttttcattttagtccttctaaaa 19037449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 19689444 - 19689497
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
19689444 ttttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 19689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 30031982 - 30031925
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaa 81  Q
    ||||||||||| |||| ||| |||||||||| |||||||||| |||||| | ||||||    
30031982 gttaaatatgtttttggtccctataaatatactaacttttcgttttaatccctctaaa 30031925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 43067232 - 43067273
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcg 65  Q
    ||||||||||| |||| ||||||||||||||| |||||||||    
43067232 gttaaatatgtttttggtccttataaatatataaacttttcg 43067273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 3460301 - 3460341
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||| ||||| ||| |||||||||||||||||||||||||    
3460301 gttaattatgttttttatccttataaatatattaacttttc 3460341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 5497151 - 5497111
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||||||| ||||||||||| ||||||||    
5497151 gttaaatatgtttttgatccctataaatatatcaacttttc 5497111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 9369950 - 9370002
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| ||| |||| ||||||||||| ||||||||| ||||    
9369950 tttagggttaaatatgtttttaatccctataaatatatcaacttttcgtttta 9370002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 30577729 - 30577671
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||  ||||||||||| ||||||||| |||||||| |||||||    
30577729 gttaaatatgtttttgatctctataaatatatcaacttttcgttttaattcctctaaaa 30577671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 35460073 - 35460131
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| || ||||||||||||||||| ||| ||| | ||||||||||||||||    
35460073 gttaaatatgttttggatccttataaatatatcaaccttttgttttaattcttctaaaa 35460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 43887214 - 43887156
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||||||||||||||  ||||||| | |||||||| |||||||    
43887214 gttaaatatgtttttgatccttataaatataccaactttttgttttaattcctctaaaa 43887156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 19158849 - 19158901
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
19158849 tttagggttaaatatgtttttgatccctataaatatatcaacttttcgtttta 19158901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 34330765 - 34330821
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattc 74  Q
    ||||| ||||||||||| |||| ||||||||||||||  ||||||||| ||||||||    
34330765 tttagggttaaatatgtttttgttccttataaatatacaaacttttcgttttaattc 34330821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 46887777 - 46887825
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaat 72  Q
    ||||||||| | |||||||||||||||||||| ||||||||| ||||||    
46887777 gttaaatatatttttgatccttataaatatatcaacttttcgttttaat 46887825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 43081641 - 43081586
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| |||| ||||||||||||||  ||||||||| ||||    
43081641 ttttttagggttaaatatgtttttggtccttataaatataccaacttttcgtttta 43081586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 47742719 - 47742774
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| ||||||| |||||||||||  ||||||||| ||||    
47742719 ttttttagggttaaatatgtttttgatctttataaatataccaacttttcgtttta 47742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 49839179 - 49839132
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaa 71  Q
    ||||||||||| |||||||||||||||||||  ||||||||| |||||    
49839179 gttaaatatgtttttgatccttataaatataccaacttttcgttttaa 49839132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 161022 - 160964
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||  ||||||||| |||| |||||| |||||||| |||||||    
161022 gttaaatatgtttttgatctctataaatatgttaaattttcgttttaattcctctaaaa 160964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 7923292 - 7923246
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||| ||||||||||| |||||||||||||||||||| || |||||    
7923292 tttagggttaaatatgtttttgatccttataaatatatcaatttttc 7923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 17380275 - 17380321
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
17380275 gttaaatatgtttttgatccctataaatatatcaacttttcgtttta 17380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 17551999 - 17551941
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||  ||||||||| |||||||| |||||||    
17551999 gttaaatatgtttttgctccctataaatatacaaacttttcgttttaattcctctaaaa 17551941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 19114111 - 19114065
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
19114111 gttaaatatgtttttggtccttataaatatatcaacttttcgtttta 19114065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 28588939 - 28588881
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||| ||| |||||||    
28588939 gttaaatatgtttttggtccctataaatatatcaacttttcgttttagttcctctaaaa 28588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29458858 - 29458812
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||  ||||||||| ||||    
29458858 gttaaatatgtttttgatccttataaatataccaacttttcgtttta 29458812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 31310895 - 31310941
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||||||||||||||  ||||||||| ||||    
31310895 gttaaatatgtttttgatccttataaatatacaaacttttcgtttta 31310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 33463275 - 33463321
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||||||||||||||| ||||||||||  ||||||||| ||||    
33463275 gttaaatatgtatttgatccctataaatatacaaacttttcgtttta 33463321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 33805960 - 33806006
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
33805960 gttaaatatgtttttgatccctataaatatatcaacttttcgtttta 33806006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 36181385 - 36181443
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||| | ||||||||| |||||||| |||||||    
36181385 gttaaatatgtttttggtccctataaatatgtcaacttttcgttttaattcctctaaaa 36181443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 49083815 - 49083757
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| || | | |||||||||    
49083815 gttaaatatgtttttggtccctataaatatattaacttttcgtttcagtccttctaaaa 49083757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 52169607 - 52169549
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||| | |||| ||| ||||||||||| ||||||||| |||| |||||||||||    
52169607 gttaaatatatttttggtccctataaatatatcaacttttcgttttagttcttctaaaa 52169549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 52253119 - 52253061
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||| ||| |||||||    
52253119 gttaaatatgtttttggtccctataaatatataaacttttcgttttagttcctctaaaa 52253061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 53277070 - 53277116
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| ||||    
53277070 gttaaatatgtttttaatccctataaatatattaacttttcgtttta 53277116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 51335826 - 51335769
Alignment:
25 ttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||| |||| ||||||||||||||  ||||||||| |||||| | |||||||    
51335826 ttaaatatgtttttggtccttataaatataccaacttttcgttttaatccctctaaaa 51335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 52336938 - 52336874
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||||| ||| ||||||| || ||||  ||||||||||||||| ||||||||||    
52336938 ttttagggttaaatatgttttttatccttacaagtatacaaacttttcggtttaa-tcttctaaaa 52336874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 6134599 - 6134635
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatat 53  Q
    |||||| ||||||||||| ||||||||||||||||||    
6134599 ttttagggttaaatatgtttttgatccttataaatat 6134635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 23804064 - 23804012
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||||||||| |||| ||| ||||||||||  ||||||||| ||||    
23804064 tttagtgttaaatatgtttttggtccctataaatatacaaacttttcgtttta 23804012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 26859815 - 26859767
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaat 72  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| ||||||    
26859815 gttaaatatgtttttggtccctataaatatatcaacttttcgttttaat 26859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 46710225 - 46710281
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| || ||||||||||| |||| ||| ||||||||| | ||||||||||||||    
46710225 atttttaagggttaaatatgtttttggtccctataaatatgtcaacttttcggttta 46710281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 46835642 - 46835690
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaat 72  Q
    ||||||||||| |||||||||||||||||||  ||||||| | ||||||    
46835642 gttaaatatgtttttgatccttataaatataccaactttttgttttaat 46835690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 48380995 - 48381059
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||| |||||||||||| |||| ||||||||||||||| || |||||  |||||| | |||||||    
48380995 tttaatgttaaatatgtttttggtccttataaatatatcaatttttcattttaatccctctaaaa 48381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 55320017 - 55320061
Alignment:
21 agtgttaaatatgtatttgatccttat-aaatatattaacttttc 64  Q
    |||||||||||||| |||||| ||||| |||||||||||||||||    
55320017 agtgttaaatatgtttttgattcttataaaatatattaacttttc 55320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 14422623 - 14422681
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||| | |||||||||    
14422623 gttaaatatgtttttgatccctataaatatatcaacttttcgttttagtccttctaaaa 14422681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 31275740 - 31275798
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| |||||||||||||| |||||| |||||||| |||||||    
31275740 gttaaatatgtttttgttccctataaatatattaagttttcgttttaattcctctaaaa 31275798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 9593260 - 9593325
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||||| |||| ||| ||||||||| ||||||||||| |||| ||| |||||||    
9593260 ttttagggttaaatatgtttttgctccctataaatatgttaacttttcgttttagttcctctaaaa 9593325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 36042318 - 36042382
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||| ||||||||||| |||||||| ||||||||| | ||||||||| |||| | |||||||||    
36042318 tttagggttaaatatgtttttgatccctataaatatgtcaacttttcgttttagtccttctaaaa 36042382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 37848205 - 37848157
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaactttt 63  Q
    |||||||| ||||||||||| |||||||||||||||||| | |||||||    
37848205 ttttttagggttaaatatgtttttgatccttataaatatgtcaactttt 37848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 2969677 - 2969732
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
2969677 ttttttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 2969732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 4051492 - 4051446
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| |||||||||||||| |||||||||| ||||    
4051492 gttaaatatgtttttggtccttataaatatactaacttttcgtttta 4051446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 17337971 - 17338017
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
17337971 gttaaatatgtttttggtccttataaatatatcaacttttcgtttta 17338017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 18104307 - 18104353
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| ||| ||||||||| ||||||||||||||||    
18104307 gttaaatatgtttttggtccctataaatatgttaacttttcggttta 18104353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 35864314 - 35864360
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
35864314 gttaaatatgtttttgatccctataaatatatcaacttttcgtttta 35864360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 41885557 - 41885499
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||| |||||||||| |||||||||| |||| ||| |||||||    
41885557 gttaaatatgtttttggtccctataaatatactaacttttcgttttagttcctctaaaa 41885499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 1053297 - 1053342
Alignment:
25 ttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||||| |||| |||||||||||||| |||||||||| ||||    
1053297 ttaaatatgtttttggtccttataaatatactaacttttcgtttta 1053342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 26821284 - 26821227
Alignment:
25 ttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||| |||| ||||||||||||||  ||||||||| |||| ||| |||||||    
26821284 ttaaatatgtttttggtccttataaatatacaaacttttcgttttagttcctctaaaa 26821227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27640974 - 27641039
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||| | |||||||| ||||||||||| ||||||| | |||||| | |||||||    
27640974 ttttagggttaaatatatttttgatccctataaatatatcaactttttgttttaatccctctaaaa 27641039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 35259634 - 35259581
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| ||||||||| | |||| ||||||||||||| | ||||||||||||||    
35259634 ttttagggttaaatatttttttggtccttataaatatgtcaacttttcggttta 35259581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 42101619 - 42101590
Alignment:
24 gttaaatatgtatttgatccttataaatat 53  Q
    ||||||||||||||||||||||||||||||    
42101619 gttaaatatgtatttgatccttataaatat 42101590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4618140 - 4618204
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||| ||||||||||| |||| ||| ||||||||||  ||||||||| |||| | |||||||||    
4618140 tttagggttaaatatgtttttgctccctataaatatacaaacttttcgttttagtccttctaaaa 4618204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 33417986 - 33417942
Alignment:
26 taaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||| ||||||||||||||||||  |||||||||| ||||    
33417986 taaatatgtttttgatccttataaatatgctaacttttcgtttta 33417942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 34941619 - 34941571
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaat 72  Q
    ||||||||||| |||||||  |||||||||||||| |||||| ||||||    
34941619 gttaaatatgtttttgatctctataaatatattaaattttcgttttaat 34941571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 38163361 - 38163413
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
38163361 tttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 38163413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 47843875 - 47843927
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
47843875 tttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 47843927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 51680856 - 51680896
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
51680856 gttaaatatgtttttgatccttataaatataccaacttttc 51680896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 19103895 - 19103944
Alignment:
21 agtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||| ||||    
19103895 agtgttaaatatgtttttgatccctataaatatatcaacttttcgtttta 19103944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 39025659 - 39025728
Alignment:
13 aattttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||| ||||||||||| |||| |||||||||||||   ||||||||| |||||| | |||||||    
39025659 aattttttagggttaaatatgtttttggtccttataaatatgccaacttttcgttttaatccctctaaaa 39025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 12331120 - 12331175
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||| ||||||||||| |||| ||| ||||||||| ||||||||||| ||||    
12331120 ttttttagggttaaatatgtttttggtccctataaatatgttaacttttcgtttta 12331175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 3637513 - 3637455
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| ||||||||||||||  ||||||||| |||| ||| |||||||    
3637513 gttaaatatgtttttggtccttataaatataccaacttttcgttttagttcctctaaaa 3637455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 5244295 - 5244352
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| |||| || |||||||||||||||||||||| |||| ||| |||||||    
5244295 gttaaatatgtttttggtc-ttataaatatattaacttttcgttttagttcctctaaaa 5244352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 11374973 - 11375019
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||| ||||||||||| ||||    
11374973 gttaaatatgtttttgatccctataaatatgttaacttttcgtttta 11375019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 11690797 - 11690739
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    ||||||||||| ||||| || ||||||||| | || |||||| ||||||||||||||||    
11690797 gttaaatatgtttttgacccctataaatatgtcaatttttcgttttaattcttctaaaa 11690739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 42661347 - 42661393
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| ||||    
42661347 gttaaatatgtttttgatccctataaatatatcaacttttcgtttta 42661393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 4001011 - 4000962
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| ||||||||    
4001011 ttttttagggttaaatatgtttttggtccctataaatatatcaacttttc 4000962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 14523644 - 14523587
Alignment:
25 ttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||||||| |||| ||||||||||||||  ||||||||| |||||| | |||||||    
14523644 ttaaatatgtttttgctccttataaatatacaaacttttcgttttaatccctctaaaa 14523587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26910448 - 26910501
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
26910448 ttttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 26910501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 34448488 - 34448553
Alignment:
17 ttttagtgttaaatatgtatttgatccttataaatatattaacttttcggtttaattcttctaaaa 82  Q
    |||||| ||||||||||| |||  ||||||||||||||| ||||||| | |||| | |||||||||    
34448488 ttttagggttaaatatgtttttagtccttataaatatatcaactttttgttttagtccttctaaaa 34448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 16218431 - 16218471
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||| |||||||||| |||||||||||||    
16218431 gttaaatatgtttttggtccttataaaaatattaacttttc 16218471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 26020348 - 26020292
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||| ||||||||||| |||| ||| ||||||||||| || |||||| ||||    
26020348 attttttagggttaaatatgtttttggtccctataaatatatcaatttttcgtttta 26020292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28137371 - 28137423
Alignment:
18 tttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||| ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
28137371 tttagggttaaatatgtttttggtccctataaatatatcaacttttcgtttta 28137423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 30896202 - 30896258
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||||||  |||||||||| |||| ||||||||||||||  ||||||||| ||||    
30896202 attttttagaattaaatatgtttttggtccttataaatatacaaacttttcgtttta 30896258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 34598151 - 34598191
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
34598151 gttaaatatgtttttggtccttataaatatatcaacttttc 34598191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 225172 - 225117
Alignment:
15 ttttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    |||||| | ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
225172 tttttttgggttaaatatgtttttggtccttataaatatatcaacttttcgtttta 225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 6769 - 6723
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
6769 gttaaatatgtttttggtccttataaatatatcaacttttcgtttta 6723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 39799 - 39839
Alignment:
24 gttaaatatgtatttgatccttataaatatattaacttttc 64  Q
    ||||| ||||| ||| |||||||||||||||||||||||||    
39799 gttaattatgttttttatccttataaatatattaacttttc 39839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 65376 - 65320
Alignment:
14 attttttagtgttaaatatgtatttgatccttataaatatattaacttttcggttta 70  Q
    ||||||||| ||||||||||| |||| ||| ||||||||| | ||||||||| ||||    
65376 attttttagggttaaatatgtttttggtccctataaatatgtcaacttttcgtttta 65320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University