View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_27 (Length: 241)
Name: NF4114_low_27
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1196511 - 1196279
Alignment:
| Q |
1 |
tgctcatatttttacgcaaaaataattcaattaacataaaactagtatatacatgtcttcaggtaactaattattaattagtatcattaatgtgaagttt |
100 |
Q |
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| T |
1196511 |
tgctcatatttttatgcaaaaataattcaattaacataaaactagtatatacatgtcttcaggtaactaattattaattagtatcattaatgtgaagttt |
1196412 |
T |
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| Q |
101 |
aattt--------aaatttgtatatgcaggcatttcttgccgtgaatgaagtgatgcaagaattgaatgagaagaatcctgatttcatacctgtgaatcc |
192 |
Q |
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| T |
1196411 |
aattttacagtaaaaatttgtatatgcaggcctttcttgcagtgaatgaagtgatgcaagaattggaggagaaaaattatgatttcatacctgtgaatcc |
1196312 |
T |
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| Q |
193 |
aaacgaacctaccaaattcgtgttgttgtcatt |
225 |
Q |
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| T |
1196311 |
aaacgaacctaccaaattcgtgttgttgtcatt |
1196279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 1277197 - 1277111
Alignment:
| Q |
139 |
tgaagtgatgcaagaattgaatgagaagaatcctgatttcatacctgtgaatccaaacgaacctaccaaattcgtgttgttgtcatt |
225 |
Q |
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| T |
1277197 |
tgaagtgatgcaacaattgaatgagaagaatcctaatttcattcctgtgaatccaaacgaacctaccaaaatcgtgttgttgtcatt |
1277111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 1224402 - 1224289
Alignment:
| Q |
110 |
ttgtatatgcaggcatttcttgccgtgaatgaagtgatgcaagaattgaatgagaagaatcctgatttcatacctgtgaatccaaacgaacctaccaaat |
209 |
Q |
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| T |
1224402 |
ttgtatgttcaggcattggttgcggtgagtgaagtgatacaagaattgaatgagaagaattccaatttcattcctgtgacggcaaacaagccaaccaaaa |
1224303 |
T |
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| Q |
210 |
tcgtgttgttgtca |
223 |
Q |
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| T |
1224302 |
tcgtgttgttgtca |
1224289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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