View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4114_low_30 (Length: 220)
Name: NF4114_low_30
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 7888132 - 7888341
Alignment:
| Q |
1 |
tgtaatcacaagtgtcggtgtcgggtgttggacaccctccaatcagaaatgtttatgtaagttttaatgaaaatttatgtattcaattgaaaactatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7888132 |
tgtaatcacaagtgtcggtgtcgggtgttggacaccctccaatcagaaatgtttatgtaagttttaatgaaaatttatgtattcaattgaaaactatttg |
7888231 |
T |
|
| Q |
101 |
actttttcaatgaataatttattaatttgaaatctaacactctttagcaagatcctaatataacatatcatacaaacacaaatacatgttataatcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7888232 |
actttttcaatgaataatttattaatttgaaatccaacactctttagcaagatcctaatataacatatcatacaaacacaaatacatgttataatcatag |
7888331 |
T |
|
| Q |
201 |
aggttctgtg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
7888332 |
aggttctgtg |
7888341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 25120218 - 25120258
Alignment:
| Q |
95 |
tatttgactttttcaatgaataatttattaatttgaaatct |
135 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
25120218 |
tatttgacttttttaaaaaataatttattaatttgaaatct |
25120258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 35923894 - 35923854
Alignment:
| Q |
95 |
tatttgactttttcaatgaataatttattaatttgaaatct |
135 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
35923894 |
tatttgactcttttaaagaataatttattaatttgaaatct |
35923854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University