View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4114_low_31 (Length: 216)

Name: NF4114_low_31
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4114_low_31
NF4114_low_31
[»] chr5 (3 HSPs)
chr5 (18-163)||(37369786-37369931)
chr5 (19-126)||(41992173-41992280)
chr5 (15-110)||(41020474-41020569)
[»] chr8 (1 HSPs)
chr8 (16-163)||(38566439-38566586)
[»] chr1 (4 HSPs)
chr1 (17-163)||(52004985-52005131)
chr1 (15-163)||(20010871-20011019)
chr1 (18-126)||(52539168-52539276)
chr1 (81-163)||(42872748-42872831)
[»] chr4 (8 HSPs)
chr4 (65-164)||(7199119-7199218)
chr4 (17-153)||(37517612-37517748)
chr4 (17-153)||(37521828-37521964)
chr4 (16-163)||(20790078-20790225)
chr4 (16-163)||(55681848-55681995)
chr4 (65-163)||(51470219-51470317)
chr4 (65-120)||(42491046-42491101)
chr4 (65-126)||(375112-375173)
[»] chr3 (4 HSPs)
chr3 (17-159)||(39759219-39759361)
chr3 (65-163)||(43823621-43823719)
chr3 (65-163)||(43067905-43068004)
chr3 (81-121)||(53286564-53286604)
[»] chr2 (3 HSPs)
chr2 (65-163)||(33458507-33458605)
chr2 (65-163)||(34479087-34479185)
chr2 (81-119)||(21472740-21472778)
[»] scaffold0101 (1 HSPs)
scaffold0101 (65-163)||(18604-18702)
[»] chr7 (3 HSPs)
chr7 (17-142)||(33516581-33516706)
chr7 (65-129)||(11591342-11591406)
chr7 (81-142)||(48826703-48826764)
[»] chr6 (2 HSPs)
chr6 (17-153)||(3288633-3288769)
chr6 (81-121)||(11843151-11843191)
[»] scaffold0368 (1 HSPs)
scaffold0368 (81-163)||(7758-7841)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 37369931 - 37369786
Alignment:
Q  18 tctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagc 117  Q
    ||||||||||||||||| ||||||||  |||||||||||        |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  37369931 tctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagc 37369832  T
Q  118 gggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||    
T  37369831 gggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 37369786  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 41992173 - 41992280
Alignment:
Q  19 ctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcg 118  Q
    |||||||||||||||| ||||||||  |||||||||||        ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  41992173 ctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctccaacgcggagtgtttggagaaagcggatgaagcg 41992272  T
Q  119 ggctcaat 126  Q
    ||| ||||    
T  41992273 ggcgcaat 41992280  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 41020569 - 41020474
Alignment:
Q  15 atctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcgg 110  Q
    |||||||||||||||||||| ||||||||  |||||||||||        |||||||||||||| ||||| || ||||||||||||||||||||||    
T  41020569 atctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctctaacgcggagcgtttggagaaagcgg 41020474  T

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Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 38566439 - 38566586
Alignment:
Q  16 tctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaa 115  Q
    ||||||||||||||||| | ||||||||  |||||||||||        |||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  38566439 tctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagttctccaacgcggagcgtttggagaaagcggatgaa 38566538  T
Q  116 gcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  38566539 gcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 38566586  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 52005131 - 52004985
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||||| ||||||||  |||||||||||        || ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  52005131 ctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacacagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag 52005032  T
Q  117 cgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||  ||||||| ||||||||||||| |||||||||||||||||||    
T  52005031 cgggtgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 52004985  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 20011019 - 20010871
Alignment:
Q  15 atctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatga 114  Q
    |||| ||||||||||||||| ||||| ||  ||| |||||||        ||||||||||| ||  |||||||  |||||| ||||||||||||| ||||    
T  20011019 atctgtgttgtcaatagcggccgaacacggcgcgaagcggccaaaaacaacaaagcgcgacgcagcgctccaacacggagcatttggagaaagcgtatga 20010920  T
Q  115 agcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  20010919 agcgggcgcaattgcaggcaaaagcgggcgtgatgcgggtcaaagcggg 20010871  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 52539168 - 52539276
Alignment:
Q  18 tctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagc 117  Q
    ||||||||||||||||| ||||||||  |||||||||||        ||||||||||| ||  ||| ||| ||||||||||||||||||||||||||| |    
T  52539168 tctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacgcagcgctgcaacgcggagcgtttggagaaagcggatgaaac 52539267  T
Q  118 gggctcaat 126  Q
    |||| ||||    
T  52539268 gggcgcaat 52539276  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 42872831 - 42872748
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggca-aaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||| |||||||||||||||||||||| |||||||||  ||||| | || | ||||||||||||||| |||||||||||||    
T  42872831 gctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcggg 42872748  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 7199119 - 7199218
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcgggt 164  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  7199119 caaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggt 7199218  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 37517748 - 37517612
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||||| ||||||||  ||||||||| |        |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37517748 ctctgttgtcaatagcggccgaacgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag 37517649  T
Q  117 cgggctcaattgcaggcaaaagcgggcacgatgcggg 153  Q
    ||||| ||||||| ||||||||||||| |||||||||    
T  37517648 cgggcgcaattgcgggcaaaagcgggcgcgatgcggg 37517612  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 37521964 - 37521828
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||||| ||||||||  ||||||||| |        |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  37521964 ctctgttgtcaatagcggccgaacgcggcgcggagcggtcaaaaacagcaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaag 37521865  T
Q  117 cgggctcaattgcaggcaaaagcgggcacgatgcggg 153  Q
    ||||| ||||||| ||||||||||||| |||||||||    
T  37521864 cgggcgcaattgcgggcaaaagcgggcgcgatgcggg 37521828  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 20790078 - 20790225
Alignment:
Q  16 tctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaa 115  Q
    ||||||||||||||||| | ||||||||  |||||||||||        ||||||||||||||  |||| || |||||||||||||||||||||||||||    
T  20790078 tctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatgaa 20790177  T
Q  116 gcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||||| ||||||| ||||||||||| | |||||||||||||||||||    
T  20790178 gcgggcgcaattgcgggcaaaagcggacgcgatgcgggtcaaagcggg 20790225  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 55681848 - 55681995
Alignment:
Q  16 tctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaa 115  Q
    ||||||||||||||||||| |||||| |  ||||| |||||        |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  55681848 tctctgttgtcaatagcggccgaacgtggcgcggaccggccaaaaacaacaaagcgcgacacagtgctccaacgcggagcgtttggagaaagcggatgaa 55681947  T
Q  116 gcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||||  ||||||| | ||||||||||| |||||| ||||||||||||    
T  55681948 gcgggtgcaattgcggacaaaagcgggcgcgatgcaggtcaaagcggg 55681995  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 51470317 - 51470219
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||||||| ||  |||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||    
T  51470317 caaagcgcgacgcagcgctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcgggcaaaagcgggcgcgatgtgggtcaaagcggg 51470219  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 42491046 - 42491101
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcggg 120  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  42491046 caaagcacgacacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg 42491101  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 375173 - 375112
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaat 126  Q
    |||| |||||| ||| ||||||| ||||||||||||| |||||||| |||||||||| ||||    
T  375173 caaaacgcgacgcaacgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgcaat 375112  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 39759219 - 39759361
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||||| ||||||||  |||||||||||        |||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  39759219 ctctgttgtcaatagcggccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtactccaacgcggagcgtttggagaaagcggatgaag 39759318  T
Q  117 cgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaag 159  Q
    ||||| ||||||| ||||||||||||| | |||||||||||||    
T  39759319 cgggcgcaattgcgggcaaaagcgggcgcaatgcgggtcaaag 39759361  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 43823719 - 43823621
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  43823719 caaagcgcgacacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 43823621  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 43067905 - 43068004
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgc-aggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||    
T  43067905 caaagcgcgacattgtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcggg 43068004  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 53286604 - 53286564
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgggc 121  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  53286604 gctccaaggcggagcgtttggagaaagcggctgaagcgggc 53286564  T

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Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 33458605 - 33458507
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||||||||||  |||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  33458605 caaagcgcgacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 33458507  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 34479185 - 34479087
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    |||||||||||| | |||||||| ||||||||||||||||||||||||||||| | | ||||||| ||||||||||||  |||||||||||||||||||    
T  34479185 caaagcgcgacaaagtgctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcgggcaaaagcgggagcgatgcgggtcaaagcggg 34479087  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 21472740 - 21472778
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgg 119  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  21472740 gctccaaggcggagcgtttggagaaagcggctgaagcgg 21472778  T

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Target: scaffold0101 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 18604 - 18702
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||||||| ||  ||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  18604 caaagcgcgacgcagcgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcggg 18702  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 33516706 - 33516581
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||||| |||| |||  |||||||||||        |||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  33516706 ctctgttgtcaatagcggccgaatgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaag 33516607  T
Q  117 cgggctcaattgcaggcaaaagcggg 142  Q
    | ||| ||||||| ||||||||||||    
T  33516606 caggcgcaattgcgggcaaaagcggg 33516581  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 11591342 - 11591406
Alignment:
Q  65 caaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgc 129  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  11591342 caaagcgcgacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgc 11591406  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 48826703 - 48826764
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggcaaaagcggg 142  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||| ||  ||||||||    
T  48826703 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgcaattgcgggtcaaagcggg 48826764  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 3288769 - 3288633
Alignment:
Q  17 ctctgttgtcaatagcggtcgaacgcgatgcggagcggccnnnnnnnncaaagcgcgacacaatgctccaatgcggagcgtttggagaaagcggatgaag 116  Q
    |||||||||||||||| | ||||||||  |||||||||||        |||||||||||||| |||||||| ||   |||||||||||||||||||||||    
T  3288769 ctctgttgtcaatagcagccgaacgcggcgcggagcggccaaaaacaacaaagcgcgacacagtgctccaacgctccgcgtttggagaaagcggatgaag 3288670  T
Q  117 cgggctcaattgcaggcaaaagcgggcacgatgcggg 153  Q
    ||||| ||||||  ||||||||||||| |||||||||    
T  3288669 cgggcgcaattgtgggcaaaagcgggcgcgatgcggg 3288633  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 11843151 - 11843191
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgggc 121  Q
    ||||||| |||||||||||||||||||| | ||||||||||    
T  11843151 gctccaaggcggagcgtttggagaaagcagctgaagcgggc 11843191  T

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Target: scaffold0368 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 7758 - 7841
Alignment:
Q  81 gctccaatgcggagcgtttggagaaagcggatgaagcgggctcaattgcaggca-aaagcgggcacgatgcgggtcaaagcggg 163  Q
    ||||||| |||||||||||||||||||||| |||||||||  ||||| | || | ||||||||||||||| |||||||||||||    
T  7758 gctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcggg 7841  T

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