View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_4 (Length: 483)
Name: NF4114_low_4
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Complemental strand, 34902717 - 34902271
Alignment:
| Q |
16 |
atgaagaagcaaaacacatatcaaaagtgaaagaatcaatcatcacatatgatgctatagccactctctattagaatctttgtgacccttcacatgttcn |
115 |
Q |
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| T |
34902717 |
atgaagaagcaaaacacatatcaaaagtgaaagaatca----tcacatatgatgctatagccactctctattagaatctttgtgacccttcacatgttca |
34902622 |
T |
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| Q |
116 |
nnnnnn-tctttgtggccctccacgtgtcgacagcctgtctattcttgcatgttactcttaaattattttgcagtctttggtcagtatcttggtggcaaa |
214 |
Q |
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| T |
34902621 |
aaaaaaatctttgtggccctccacgtgtcgacagcctgtctattcttgcatgttactcttaaattattttgcagtctttggtcagtatcttggtggcaaa |
34902522 |
T |
|
| Q |
215 |
ggcaaatccaattgaaaaagcacaagactaattgatcaaatactaggagtatatctaggataagttctatgatcgagcactttaggtgattgagtgattc |
314 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34902521 |
ggcaaatccaattgaaaaagcacaaggctaattgatcaaatactaggagtatatctaggataagttctatgatcgagcactttagatgattgagtgattc |
34902422 |
T |
|
| Q |
315 |
actgaaaattggtagttgaaaattgttcaaaacattaatgacggttggtatttgtactctaaaaaataaaaggtcaaagttatctccgtcctcacaagtt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34902421 |
actgaaaattggtagttgaaaattgttcaaaacattaatgacggttggtatttgtactctaaaaaataaaaggtcaaagttctctccgtcctcacaagtt |
34902322 |
T |
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| Q |
415 |
gctgtcgatttgtttaaaacaagaaaagnnnnnnntataagttgatatttg |
465 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34902321 |
gctgtcgatttgtttaaaacaagaaaagaaaaaaatataagttgatatttg |
34902271 |
T |
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