View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_7 (Length: 432)
Name: NF4114_low_7
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 43553893 - 43554293
Alignment:
| Q |
19 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
118 |
Q |
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| T |
43553893 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
43553992 |
T |
|
| Q |
119 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgat |
218 |
Q |
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| T |
43553993 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgat |
43554092 |
T |
|
| Q |
219 |
gcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaa |
318 |
Q |
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| T |
43554093 |
gcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaa |
43554192 |
T |
|
| Q |
319 |
catttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttgaga |
418 |
Q |
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| T |
43554193 |
catttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttgaga |
43554292 |
T |
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| Q |
419 |
a |
419 |
Q |
| |
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| T |
43554293 |
a |
43554293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 34 - 416
Target Start/End: Original strand, 43549907 - 43550289
Alignment:
| Q |
34 |
ttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtaccattggaaacttgcac |
133 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | ||||| ||| |||||||||| || |||| ||| |
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| T |
43549907 |
ttctcaccttatggcgaccgcctgaaactgcgagatgtaagacagtgttgccatatttatcttgtctgtgcactagatttgtaccataggcaactctcac |
43550006 |
T |
|
| Q |
134 |
caagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgatgcagcacttcctgac |
233 |
Q |
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||||||||| ||||| ||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| |||| ||||| | |||| |||| || | |
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| T |
43550007 |
caagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagtacgcagtacttactacc |
43550106 |
T |
|
| Q |
234 |
acaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaacatttgaatcgcgtt |
333 |
Q |
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| T |
43550107 |
acaaaatagtcaagggttgagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagcaagttttgaatcgcgac |
43550206 |
T |
|
| Q |
334 |
ttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttga |
416 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
43550207 |
ttagtaggatccatacaatctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttga |
43550289 |
T |
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