View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_8 (Length: 432)
Name: NF4114_low_8
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Complemental strand, 43061128 - 43060717
Alignment:
| Q |
6 |
caaaggaaagagcggaaaataaaactgatataacgcagctggaacacttggagtcgtatcagaacccaggtgcggaagaaatgcggctacgtaccagctg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061128 |
caaaggaaagagcggaaaataaaactgatataacgcagctggaacacttggagtcgtatcagaacccaggtgcggaagaaatgcggctacgtaccagctg |
43061029 |
T |
|
| Q |
106 |
caacatcaaaacagctcggctgcacaacagcaacctacatgccaaaa-ccagctttgaactatgcagaaaattacctcaaacttgctccaatgcagaaaa |
204 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43061028 |
caacatcgaaacagctcggctgcacaacagcaacccacatgccaaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaatgcagaaaa |
43060929 |
T |
|
| Q |
205 |
tcaccttgaaccaactatgaattatgcagaaaaacacacgcgaaaaacacctgattcagtaatagaaatattccaaaccaaaactaaaactaccaaacta |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43060928 |
tcaccttgaaccaactatgaattatgcagaaaaacacacgcgaaaaacacctgattcagtaatagaaatataccaaaccaaaactaaaactaccaaacta |
43060829 |
T |
|
| Q |
305 |
ctacatttaaaccctatatgcattaatggcctcaataaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaaggca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43060828 |
ctacatttaaaccctatatgcattaatgccctcaataaacatatgaaatttatttgtgaccagattccagtgatttgtgacccgatttaattgcaaggca |
43060729 |
T |
|
| Q |
405 |
caatatcattca |
416 |
Q |
| |
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|||||||||||| |
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| T |
43060728 |
caatatcattca |
43060717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 149 - 416
Target Start/End: Complemental strand, 1480635 - 1480371
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa-aacacac |
243 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
1480635 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgt |
1480536 |
T |
|
| Q |
244 |
gcgaaaaacacctgattcagta---atagaaatattccaaaccaaaactaaaactaccaaactactacatttaaaccctatatgcattaatggcctcaat |
340 |
Q |
| |
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||| |||||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
1480535 |
gcgtaaaacacccgattcagtagtaataggaagataccaaacc-----------taccaaactactacatttaaaccctctatgtattaatgctttcaat |
1480447 |
T |
|
| Q |
341 |
aaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaaggcacaatatcattca |
416 |
Q |
| |
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||||||||| |||||| |||||||||||||| ||| ||||| | || |||||||||||| | ||| |||||||||| |
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| T |
1480446 |
aaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcatgacacgatatcattca |
1480371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 416
Target Start/End: Complemental strand, 19180439 - 19180175
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa-aacacac |
243 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
19180439 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgt |
19180340 |
T |
|
| Q |
244 |
gcgaaaaacacctgattcagta---atagaaatattccaaaccaaaactaaaactaccaaactactacatttaaaccctatatgcattaatggcctcaat |
340 |
Q |
| |
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||| |||||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
19180339 |
gcgtaaaacacccgattcagtagtaataggaagataccaaacc-----------taccaaactactacatttaaaccctctatggattaatgctttcaat |
19180251 |
T |
|
| Q |
341 |
aaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaaggcacaatatcattca |
416 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||| | || |||||||||||||| ||| |||||||||| |
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| T |
19180250 |
aaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattca |
19180175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 1380397 - 1380302
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttgctcca----atgcagaaaatcaccttgaaccaactatgaattatgcagaaaaaca |
240 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||| |||||| ||| ||||||| | ||| ||||| || ||||||||||||||||||| |
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|
| T |
1380397 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaaaaca |
1380302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 11475252 - 11475212
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttg |
189 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
11475252 |
aaaaccagctttgaactacgtagagaattacctcaaacttg |
11475212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 11503292 - 11503252
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttg |
189 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
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|
| T |
11503292 |
aaaaccagctttgaactacgtagagaattacctcaaacttg |
11503252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 38251714 - 38251754
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttg |
189 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
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| T |
38251714 |
aaaaccagctttgaactacgtagagaattacctcaaacttg |
38251754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 43157828 - 43157788
Alignment:
| Q |
149 |
aaaaccagctttgaactatgcagaaaattacctcaaacttg |
189 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
43157828 |
aaaaccagctttgaactacgtagagaattacctcaaacttg |
43157788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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