View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4114_low_9 (Length: 431)
Name: NF4114_low_9
Description: NF4114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4114_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 12767793 - 12767963
Alignment:
| Q |
7 |
cacgaaaccacaaaagaggttgggagagccatcgaagcacaaatcagatcc----------taaaatcggatctgaatgagtcggctttgatgaacctac |
96 |
Q |
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| T |
12767793 |
cacgaaaccacaaaagaggtcgggagagccatcgaagcacaaatcagatctgcaaagaaattaaaatcggatctgaatgagtcggttttgatgaacctac |
12767892 |
T |
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| Q |
97 |
ccgaaagggtttgagaaggcaacatcaacctcaaagaatgtctatttggtcatcgacaatgacggtgacca |
167 |
Q |
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| T |
12767893 |
ccgaaagggtttgagaaggcaacatcgacctcaaagaaggcctatttggtcgtcgacaacgacggtgacca |
12767963 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 12767977 - 12768113
Alignment:
| Q |
237 |
gacaaccttgtggatctgagatacaactccatcttcaatctaaatgtcgagnnnnnnnnccagcaagcatatcaatctaaaaagaaaccaaacccctcaa |
336 |
Q |
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| T |
12767977 |
gacaaccatgtggatctgagatacaaatccatcttcaatatgaattttgagcaaaaaacccagcaaatggatcgatctacaaagaaaccaaacccatcaa |
12768076 |
T |
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| Q |
337 |
cgtggcggcgacgagaggggttttcaacaacagaaaa |
373 |
Q |
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| T |
12768077 |
cgtggcggaggcgagaggggtcttcaacaacagaaaa |
12768113 |
T |
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