View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_high_20 (Length: 351)
Name: NF4115_high_20
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_20 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 6182 - 6329
Alignment:
| Q |
7 |
gcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggag |
106 |
Q |
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| T |
6182 |
gcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggag |
6281 |
T |
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| Q |
107 |
agccactctttggtccaataaagagacagatcagcatccatagaatct |
154 |
Q |
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| T |
6282 |
agccactctttggtccaataaagagacagatcagcatccatagaatct |
6329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 49238088 - 49237921
Alignment:
| Q |
7 |
gcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |
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| T |
49238088 |
gcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcggag |
49237989 |
T |
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| Q |
107 |
agccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg |
174 |
Q |
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| T |
49237988 |
agccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg |
49237921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 44285603 - 44285720
Alignment:
| Q |
220 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
319 |
Q |
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| T |
44285603 |
ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct |
44285702 |
T |
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| Q |
320 |
agttcttctcccaatctc |
337 |
Q |
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| T |
44285703 |
agttcttctcccaatctc |
44285720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 44070410 - 44070293
Alignment:
| Q |
220 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
319 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
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| T |
44070410 |
ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct |
44070311 |
T |
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| Q |
320 |
agttcttctcccaatctc |
337 |
Q |
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|||||||||||||||||| |
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| T |
44070310 |
agttcttctcccaatctc |
44070293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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