View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4115_high_21 (Length: 351)
Name: NF4115_high_21
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 2007409 - 2007086
Alignment:
| Q |
14 |
cagccctcttgattatatctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgagagttataacattc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007409 |
cagccctcttgattatatctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgagagttataacattc |
2007310 |
T |
|
| Q |
114 |
accctatttctttctacaaataatacattataccaagcatgcttataatacgttatatttgacagttgagtagaattggtgtataatatctgcatatttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2007309 |
accctatttctttctacaaataatacattataccaagcatgcttataatacgttatatttgacagttgagtagaattggtgtataatatctgcatacttt |
2007210 |
T |
|
| Q |
214 |
attggtttttcataccaacttagtaatttccatttactaaattattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaagg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007209 |
attggtttttcataccaacttagtaatttccatttactaaattattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaagg |
2007110 |
T |
|
| Q |
314 |
atatctttatttagatgaacaatc |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2007109 |
atatctttatttagatgaacaatc |
2007086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 337
Target Start/End: Original strand, 1945496 - 1945660
Alignment:
| Q |
170 |
atttgacagttgagtagaattggtgtataatatctgcatattttattggtttttcataccaacttagtaatttccatttactaaattattgtaattttgt |
269 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || || |||||||| ||||||||| ||||| || |||| |||||| | ||||||||||||||| |
|
|
| T |
1945496 |
atttaacagttgagtagaattggtgtataatatgtgattactttattgggttttcatactaacttggtgattttcatttaat---ttattgtaattttgt |
1945592 |
T |
|
| Q |
270 |
gtattttctgttgtgaactattttttcactattgattcctaaggatatctttatttagatgaacaatc |
337 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| | ||||||||||||||||| ||||| |||||| |
|
|
| T |
1945593 |
gtattttttgttgtgaactattttgttgatattgctgcctaaggatatctttataaagatgtacaatc |
1945660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 1965900 - 1965982
Alignment:
| Q |
255 |
ttattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaaggatatctttatttagatgaacaatc |
337 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
1965900 |
ttattgtcattttgtgtatattctgttgtgaactattttgtcagtattgatgcctaaggatatctttatttagttgaacaatc |
1965982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 35716380 - 35716310
Alignment:
| Q |
31 |
tctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgaga |
101 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||||| || | ||||||||||||||||| |||||| |||| |
|
|
| T |
35716380 |
tctcctaagaacctgctaatacatatatcatgatagacatgacaagttatagcaataatagcagaacgaga |
35716310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 2010841 - 2010796
Alignment:
| Q |
170 |
atttgacagttgagtagaattggtgtataatatctgcatattttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
2010841 |
atttgacagttgagtagaattggtgt-taatatctgcttactttatt |
2010796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5890212 - 5890162
Alignment:
| Q |
19 |
ctcttgattatatctcctaagaacttgataatacacatatcaagatagtca |
69 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5890212 |
ctcttgattatatcccttaagaacttgctaatatacatatcaagatagtca |
5890162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University