View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_high_27 (Length: 307)
Name: NF4115_high_27
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_27 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 35205262 - 35204959
Alignment:
| Q |
1 |
caaccgaaactctgtgtaaatccaat----attattgatgatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctctttgattgta |
96 |
Q |
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|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205262 |
caaccgaaactctgagtaaatccaattaatattattgataatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctctttgattgta |
35205163 |
T |
|
| Q |
97 |
gtatttattctagttaagacattaatcaactgcgctcttgaggtctgcttaga--nnnnnnnnggaaacattagtggcaacttatcattgcttagtaact |
194 |
Q |
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| T |
35205162 |
gtatttattctagttaagacattaattaacggcgctcttgaggtctacttagattttttttttggaaacattagtggcaacttatcattgcttagtaact |
35205063 |
T |
|
| Q |
195 |
gttgttttacaattctactcctgnnnnnnnaaaaggcaagtgaaaagctcacacccttcataagtaatttaagtgcactttgtgcaagaccatttgagta |
294 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
35205062 |
gttgttttgcaattctactcctgtttttttaaaaggcaagtgaaaagctcacacccttcataagtaatttaagtacactttttgcaagaccatttgagta |
35204963 |
T |
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| Q |
295 |
ttat |
298 |
Q |
| |
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|||| |
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| T |
35204962 |
ttat |
35204959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 22472359 - 22472301
Alignment:
| Q |
30 |
attgatgatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctctt |
88 |
Q |
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|||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
22472359 |
attggtgatacatgtcaagatggttggatgaaagaggcttattgtagctaaattctctt |
22472301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 5545 - 5649
Alignment:
| Q |
18 |
aaatccaatattattgatgatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctctttgattgtagtatttattctagttaagaca |
117 |
Q |
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| T |
5545 |
aaatccagtgttattgatggtacatgtcatcatggtgagatgaaagaggcttattggagctacattcacttcagccatagtatctgttctagttaagaca |
5644 |
T |
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| Q |
118 |
ttaat |
122 |
Q |
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||||| |
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| T |
5645 |
ttaat |
5649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 2907267 - 2907328
Alignment:
| Q |
158 |
ggaaacattagtggcaacttatcattgcttagtaac--tgttgttttacaattctactcctg |
217 |
Q |
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| T |
2907267 |
ggaaacattagtagcaacttattatagcttaataactgtgttgttttataattctactcctg |
2907328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 31442115 - 31442049
Alignment:
| Q |
21 |
tccaatattattgatgatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctct |
87 |
Q |
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||||| |||||||||| | |||| || ||||||| |||||||||||||||||||||| ||||||| |
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| T |
31442115 |
tccaacattattgatggtgcatgccaggatggtagaatgaaagaggcttattggagctacattctct |
31442049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 42300394 - 42300455
Alignment:
| Q |
27 |
attattgatgatacatgtcaagatggtatgttgaaagaggcttattggagctaaattctctt |
88 |
Q |
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| T |
42300394 |
attattgatggtacatgtcttgatggtgagatgaaagaggcttattggagttacattctctt |
42300455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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