View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_high_30 (Length: 280)
Name: NF4115_high_30
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 15240406 - 15240679
Alignment:
| Q |
1 |
tattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240406 |
tattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttca |
15240505 |
T |
|
| Q |
101 |
ataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatttattatctactagtcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240506 |
ataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatttattatctactagtcttga |
15240605 |
T |
|
| Q |
201 |
ttattggactacgtcaacacatgcatgagaaggaggttgccaccaccttaccaaatgcttcaatagtatagaat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240606 |
ttattggactacgtcaacacatgcatgagaaggaggttgccaccaccttaccaaatgcttcaatagtatagaat |
15240679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 15246740 - 15246905
Alignment:
| Q |
1 |
tattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttca |
100 |
Q |
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||||||||||||||||||||||| ||| || ||| |||||||||||||||||| | | |||| |||||||||| | ||||||||||||||| |||||| |
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| T |
15246740 |
tattgctagctttctactatattgtttggcttttagggttaaacttaaatttg---ccagaaggcttgatacccttaaggaagtgtttggttcgctttca |
15246836 |
T |
|
| Q |
101 |
ataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacaca |
169 |
Q |
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| T |
15246837 |
ataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacattatcatatgcaca |
15246905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 10693771 - 10693576
Alignment:
| Q |
3 |
ttgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaat |
102 |
Q |
| |
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|||||||||||||| ||||||| || || |||||| |||| || || |||| |||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
10693771 |
ttgctagctttctaatatattcctttgccttttggattaagctcaagtttg---caactagggttgataccttcatggaagtgtttggttccctttcaat |
10693675 |
T |
|
| Q |
103 |
aatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatttattatctactagtcttgat |
201 |
Q |
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| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| || |||| ||| |||| |
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| T |
10693674 |
agtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgat |
10693576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 10698360 - 10698182
Alignment:
| Q |
1 |
tattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttca |
100 |
Q |
| |
|
||||||||| ||||| ||||||| ||| || |||||| |||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10698360 |
tattgctagttttctcctatattgtttggccttttggattaagcttaagttt---acaacaagggttgataccctcatggaagtgtttggttccctttca |
10698264 |
T |
|
| Q |
101 |
ataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcattt |
182 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | ||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
10698263 |
ataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcattt |
10698182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 10657646 - 10657472
Alignment:
| Q |
5 |
gctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataa |
104 |
Q |
| |
|
||||||||||||||||||| || || |||||| |||| ||||| |||| || || | |||||||||||||||||| ||||||||| |||||||||| |
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| T |
10657646 |
gctagctttctactatattgctttgccttttggattaagcttaagtttgctataagac---ttgataccctcatggaagcgtttggttcactttcaataa |
10657550 |
T |
|
| Q |
105 |
tttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcattt |
182 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||| |||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
10657549 |
tttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccatttacacattatggttcattt |
10657472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 10707567 - 10707391
Alignment:
| Q |
3 |
ttgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaat |
102 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| |||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10707567 |
ttgctagctttctactatattgttttgccttttggattaagcttatgtttg---caacaagggttgataccctcatggaagtgtttggttccctttcaat |
10707471 |
T |
|
| Q |
103 |
aatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcattt |
182 |
Q |
| |
|
| |||||||||| ||||||||||| ||| | ||||||| | | |||||||| |||||||||| ||| |||||||||||| |
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| T |
10707470 |
agtttctttggtgttgatgttctttccagaaaattgggaaacacttggatactttatcatatatacaatatggttcattt |
10707391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 10690372 - 10690228
Alignment:
| Q |
59 |
acaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacatta |
158 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||| |||||| ||||||| ||||| |||||||| ||||| | |||||||||||||||||||| |||| |
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| T |
10690372 |
acaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattggggattatttggatatatta |
10690273 |
T |
|
| Q |
159 |
tcatatacacattatggttcatttattatctactagtcttgatta |
203 |
Q |
| |
|
||||||||||| |||||||||||| | || ||||| || |||||| |
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| T |
10690272 |
tcatatacacaatatggttcatttttcatgtactaatcatgatta |
10690228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 10633980 - 10633883
Alignment:
| Q |
84 |
tgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatt |
181 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||| || | | ||||||| || ||||||||||| ||||||||||| |||||||||| |
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|
| T |
10633980 |
tgtttggttcgctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcatt |
10633883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 33777385 - 33777571
Alignment:
| Q |
1 |
tattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||| |||| |||| ||| |||||||| |||||||| ||||| |||||||||||||| |||||| |
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|
| T |
33777385 |
tattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcatagaagtgtttggttcactttca |
33777484 |
T |
|
| Q |
101 |
ataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatttattat |
187 |
Q |
| |
|
||| |||||||||| || |||||| | ||| ||||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| |
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|
| T |
33777485 |
atagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatcatatacacagcatggttcatttgttat |
33777571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 33774804 - 33774936
Alignment:
| Q |
59 |
acaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggtttt----gatgttcttcccacacaattggggattatttggatac |
154 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || ||||||||| |||||||||| || ||||||| ||||| |||||||| ||||| |||||| |
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| T |
33774804 |
acaagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaattggacattatcaggatac |
33774903 |
T |
|
| Q |
155 |
attatcatatacacattatggttcatttattat |
187 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |
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|
| T |
33774904 |
attatcatatacacgatatggttcatttgttat |
33774936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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