View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_high_32 (Length: 253)
Name: NF4115_high_32
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15240165 - 15240406
Alignment:
| Q |
1 |
cttgtaatttcaattcaatggtggatgtggtaagacaaagctccaattttaatagatgtcaagtgaccatcaatgttaatgttagtaatgttcatgtaca |
100 |
Q |
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| T |
15240165 |
cttgtaatttcaattcaatggtggatgtggtaagacaaagatccaattttaatagatgtcaagtgatcatcaatgttaatgttagtaatgttcatgtaca |
15240264 |
T |
|
| Q |
101 |
taacaacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataat |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240265 |
taacaacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataat |
15240364 |
T |
|
| Q |
201 |
cccacagcctttcaactccatccaaagacaatgttagtctct |
242 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15240365 |
cccacagtctttcaactccatccaaagacaatgttagtctct |
15240406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 15246621 - 15246740
Alignment:
| Q |
119 |
agaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatcccacagcctttcaactc |
218 |
Q |
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|||||||||| |||||||||| | ||||||||| |||||| ||| || | |||||| | | ||| | |||||||||||||||||| |||||||| | |
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| T |
15246621 |
agaaaccaatcctcttcatggccctgtggccttatttttttgtgtactcagaggtttcc--cgaattagctatccagataatcccacaacctttcaa--c |
15246716 |
T |
|
| Q |
219 |
catccaaagacaatgttagtctct |
242 |
Q |
| |
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| T |
15246717 |
aatccaaagacaatgttagtctct |
15246740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 33777248 - 33777385
Alignment:
| Q |
105 |
aacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
204 |
Q |
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||||||||||| ||||||||||| || ||||||| ||| ||||||||||||| | ||| || || ||||| || ||||| |||||||||||||||||| |
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| T |
33777248 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
33777347 |
T |
|
| Q |
205 |
cagcctttcaactccatccaaagacaatgttagtctct |
242 |
Q |
| |
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| || ||||| ||||||||||||||||||| |||||| |
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| T |
33777348 |
ctgcatttcatgtccatccaaagacaatgtttgtctct |
33777385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 33774610 - 33774738
Alignment:
| Q |
105 |
aacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
204 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| ||| ||||||||||||| | | || || ||||| || ||||| |||||||||||||||||| |
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| T |
33774610 |
aacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttcaaattagttatccagataatccca |
33774707 |
T |
|
| Q |
205 |
cagcctttcaactccatccaaagacaatgtt |
235 |
Q |
| |
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| || ||||| ||||||||||||||||||| |
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| T |
33774708 |
ctgcatttcatgtccatccaaagacaatgtt |
33774738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 10693896 - 10693772
Alignment:
| Q |
119 |
agaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatcccacagcctttcaactc |
218 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||| ||| | ||| || | ||||| ||||||||| ||||||||||||| |||| || |||||| || |
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| T |
10693896 |
agaaaccaatcctcttcattgtcttatggccttcactttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatc |
10693797 |
T |
|
| Q |
219 |
catccaaagacaatgttagtctctg |
243 |
Q |
| |
|
||||||||||||||| || |||||| |
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| T |
10693796 |
catccaaagacaatgatactctctg |
10693772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 10657787 - 10657649
Alignment:
| Q |
105 |
aacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
204 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||| ||| || ||||| |||| | ||| || || ||||| || ||||| |||||||| ||||||||| |
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| T |
10657787 |
aacatcatgggagtagaaaccaatcctctccatggccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatccca |
10657688 |
T |
|
| Q |
205 |
cagcctttcaactccatccaaagacaatgttagtctctg |
243 |
Q |
| |
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| || |||||| |||||||||||||||| || |||||| |
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| T |
10657687 |
ctgcatttcaagcccatccaaagacaatgctactctctg |
10657649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 10707708 - 10707568
Alignment:
| Q |
103 |
acaacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatcc |
202 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| | ||| ||||||||||||| | ||| || | | ||| |||||||| ||||||||||||||| |
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| T |
10707708 |
acaacatcatgggagtagaaaccaaccctctacatagccttatggccttcattttctttgtactccttgctttcctccaaattacttatccagataatcc |
10707609 |
T |
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| Q |
203 |
cacagcctttcaactccatccaaagacaatgttagtctctg |
243 |
Q |
| |
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||| || |||||| |||||||||| |||||| || |||||| |
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| T |
10707608 |
cactgcatttcaaatccatccaaaaacaatgataatctctg |
10707568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 10634204 - 10634075
Alignment:
| Q |
113 |
gggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatcccacagccttt |
212 |
Q |
| |
|
|||| |||||| |||| || |||||| ||| ||||||||||||||| ||| || || ||||| |||||||| | |||||||| ||||| || | ||| |
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| T |
10634204 |
gggagtagaaaacaatccttttcatgtccttatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgttt |
10634105 |
T |
|
| Q |
213 |
caactccatccaaagacaatgttagtctct |
242 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |
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|
| T |
10634104 |
gaagtccatccaaagacaatgtttgtctct |
10634075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 10698513 - 10698364
Alignment:
| Q |
89 |
tgttcatgtacataacaacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgt |
188 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||| ||| ||| ||||| ||||| ||||| ||||| | ||| || | ||||| |||||||| | |
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| T |
10698513 |
tgttcatgtatataataacatcatgggaatggaaactaatcctcaacatggccttgtagcctttattttctttgtactccttggtttcctccaaattaga |
10698414 |
T |
|
| Q |
189 |
tatccagataatcccacagcctttcaactccatccaaagacaatgttagt |
238 |
Q |
| |
|
|| ||||| ||||| || | |||||| |||||||||||| || |||||| |
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|
| T |
10698413 |
tacccagaaaatcctaccccatttcaaatccatccaaagataacgttagt |
10698364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 10690564 - 10690438
Alignment:
| Q |
105 |
aacatcatgggaatagaaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
204 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| ||||| ||||| ||||||||||| | ||| || | ||||| |||||| | | |||||||| ||||| | |
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| T |
10690564 |
aacatcatgggagtagaaactaatcctcaacatggccttgtagccttcattttctttgtactccttggtttcctccaagttagatatccagaaaatccta |
10690465 |
T |
|
| Q |
205 |
cagcctttcaactccatccaaagacaa |
231 |
Q |
| |
|
| | |||||| ||||||||||||||| |
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|
| T |
10690464 |
ccccttttcaagtccatccaaagacaa |
10690438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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