View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_high_39 (Length: 237)

Name: NF4115_high_39
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_high_39
NF4115_high_39
[»] chr7 (17 HSPs)
chr7 (55-196)||(11020010-11020152)
chr7 (67-155)||(5556297-5556384)
chr7 (56-155)||(26625567-26625665)
chr7 (56-155)||(36658991-36659089)
chr7 (56-155)||(43183715-43183813)
chr7 (65-155)||(8394957-8395046)
chr7 (56-155)||(37001485-37001583)
chr7 (65-155)||(34468579-34468668)
chr7 (65-155)||(36631649-36631738)
chr7 (67-155)||(3113367-3113454)
chr7 (56-155)||(8866977-8867075)
chr7 (56-155)||(38637628-38637726)
chr7 (56-155)||(33686386-33686484)
chr7 (65-155)||(14776351-14776440)
chr7 (56-155)||(7003450-7003547)
chr7 (56-155)||(7049321-7049418)
chr7 (198-232)||(11019991-11020025)
[»] chr5 (25 HSPs)
chr5 (55-155)||(15959191-15959290)
chr5 (55-155)||(192648-192747)
chr5 (56-155)||(31681189-31681287)
chr5 (56-155)||(33431143-33431241)
chr5 (65-155)||(39656772-39656861)
chr5 (55-155)||(31500963-31501062)
chr5 (56-155)||(37255428-37255526)
chr5 (65-155)||(10036740-10036829)
chr5 (65-155)||(16333145-16333234)
chr5 (65-155)||(1775623-1775712)
chr5 (65-155)||(13818810-13818899)
chr5 (65-155)||(16155724-16155813)
chr5 (61-155)||(12278101-12278194)
chr5 (65-155)||(36292865-36292954)
chr5 (74-155)||(19986286-19986366)
chr5 (56-155)||(17331864-17331961)
chr5 (65-152)||(39435530-39435616)
chr5 (65-155)||(26282562-26282651)
chr5 (95-155)||(36292216-36292276)
chr5 (95-155)||(43069703-43069764)
chr5 (95-146)||(31272271-31272322)
chr5 (72-154)||(30297220-30297301)
chr5 (64-155)||(23034793-23034885)
chr5 (196-234)||(28801840-28801878)
chr5 (129-157)||(37255600-37255628)
[»] chr1 (14 HSPs)
chr1 (55-155)||(15209535-15209634)
chr1 (55-155)||(17446115-17446214)
chr1 (55-155)||(3829805-3829904)
chr1 (61-155)||(320923-321016)
chr1 (65-155)||(42310186-42310275)
chr1 (67-155)||(7434255-7434342)
chr1 (65-155)||(23313827-23313916)
chr1 (56-155)||(35908352-35908450)
chr1 (65-155)||(32981303-32981392)
chr1 (55-155)||(41971502-41971600)
chr1 (71-155)||(11957604-11957687)
chr1 (196-234)||(15209452-15209490)
chr1 (196-234)||(41971419-41971457)
chr1 (128-157)||(35908523-35908552)
[»] chr4 (35 HSPs)
chr4 (55-153)||(30110785-30110882)
chr4 (56-155)||(3292143-3292241)
chr4 (56-155)||(44157447-44157545)
chr4 (56-155)||(50204333-50204431)
chr4 (55-155)||(48130800-48130900)
chr4 (63-155)||(6689482-6689573)
chr4 (65-155)||(25931543-25931632)
chr4 (65-155)||(36381593-36381682)
chr4 (56-155)||(7769385-7769483)
chr4 (56-155)||(28876560-28876658)
chr4 (56-155)||(35546774-35546872)
chr4 (56-155)||(13390693-13390791)
chr4 (56-155)||(13398775-13398873)
chr4 (56-155)||(33135690-33135788)
chr4 (65-155)||(6236341-6236430)
chr4 (55-155)||(26449546-26449645)
chr4 (56-155)||(30215992-30216089)
chr4 (56-155)||(42333019-42333117)
chr4 (65-155)||(26438523-26438612)
chr4 (65-155)||(40529918-40530007)
chr4 (65-155)||(43356738-43356827)
chr4 (74-155)||(48990143-48990223)
chr4 (95-155)||(1818517-1818577)
chr4 (95-155)||(29995244-29995304)
chr4 (95-153)||(10352144-10352202)
chr4 (65-155)||(13013022-13013111)
chr4 (95-153)||(30076899-30076957)
chr4 (65-155)||(34406528-34406617)
chr4 (65-155)||(47501607-47501696)
chr4 (73-155)||(43142831-43142911)
chr4 (72-120)||(17510508-17510555)
chr4 (196-237)||(25931720-25931760)
chr4 (201-234)||(30110931-30110964)
chr4 (196-233)||(48130945-48130982)
chr4 (65-117)||(20130147-20130198)
[»] chr3 (17 HSPs)
chr3 (55-155)||(45183802-45183901)
chr3 (56-155)||(6930140-6930238)
chr3 (55-155)||(5136114-5136214)
chr3 (56-155)||(33041773-33041871)
chr3 (65-155)||(34083366-34083455)
chr3 (56-155)||(35514820-35514917)
chr3 (72-155)||(40080986-40081068)
chr3 (65-155)||(19390980-19391069)
chr3 (62-155)||(27936009-27936102)
chr3 (65-155)||(6268670-6268759)
chr3 (65-155)||(22967688-22967777)
chr3 (65-155)||(39772624-39772713)
chr3 (56-155)||(6502814-6502912)
chr3 (95-153)||(45336719-45336777)
chr3 (73-155)||(11017516-11017597)
chr3 (95-145)||(19564772-19564822)
chr3 (97-154)||(29564409-29564465)
[»] chr2 (20 HSPs)
chr2 (56-155)||(12756084-12756182)
chr2 (56-155)||(45419405-45419503)
chr2 (55-155)||(7071779-7071878)
chr2 (61-155)||(26161947-26162040)
chr2 (65-155)||(42442818-42442907)
chr2 (65-155)||(2286740-2286829)
chr2 (65-155)||(32126433-32126522)
chr2 (55-155)||(771557-771655)
chr2 (67-155)||(35963525-35963612)
chr2 (72-155)||(16405969-16406051)
chr2 (65-155)||(18982378-18982466)
chr2 (56-155)||(8058589-8058687)
chr2 (65-155)||(41250877-41250966)
chr2 (65-155)||(6403048-6403137)
chr2 (65-155)||(17444280-17444369)
chr2 (55-139)||(45122033-45122115)
chr2 (55-116)||(4554475-4554535)
chr2 (103-155)||(17373648-17373700)
chr2 (112-152)||(31580980-31581020)
chr2 (196-234)||(7071692-7071730)
[»] chr8 (17 HSPs)
chr8 (56-155)||(9878043-9878141)
chr8 (65-155)||(15839106-15839195)
chr8 (55-155)||(2728065-2728164)
chr8 (56-155)||(16787271-16787369)
chr8 (74-155)||(42231778-42231858)
chr8 (76-155)||(3436076-3436154)
chr8 (65-152)||(29727632-29727718)
chr8 (65-155)||(3648036-3648125)
chr8 (55-155)||(4404830-4404929)
chr8 (62-155)||(7278854-7278947)
chr8 (65-155)||(24019635-24019724)
chr8 (65-155)||(28524032-28524121)
chr8 (65-155)||(39915348-39915437)
chr8 (95-155)||(36409346-36409406)
chr8 (73-146)||(34136056-34136128)
chr8 (196-234)||(40470031-40470069)
chr8 (196-237)||(9878186-9878226)
[»] chr6 (8 HSPs)
chr6 (56-155)||(28997552-28997650)
chr6 (65-155)||(13838632-13838721)
chr6 (55-147)||(31028209-31028300)
chr6 (65-155)||(34252965-34253054)
chr6 (82-155)||(34948071-34948143)
chr6 (96-155)||(33228597-33228656)
chr6 (65-155)||(399451-399540)
chr6 (95-153)||(29744130-29744189)
[»] scaffold0154 (1 HSPs)
scaffold0154 (56-155)||(32038-32136)
[»] scaffold0069 (1 HSPs)
scaffold0069 (65-155)||(18393-18482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-155)||(479701-479790)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 11020152 - 11020010
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11020152 tttttctgtgtaaagctatatttttacgttcttaactcgcc-tctaagaaatcatgaaaaaattcaatctcttgattgcttttttggacttcgcgtatat 11020054  T
Q  155 tcaatctcgaattatatgttc--agtacatgttatttaattaca 196  Q
    ||||||| |||||| ||||||  | || ||||||||||||||||    
T  11020053 tcaatctggaattacatgttcaaaatatatgttatttaattaca 11020010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5556297 - 5556384
Alignment:
Q  67 aagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5556297 aagctatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 5556384  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 26625567 - 26625665
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26625567 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaaatcaatctcttggttgcttttttggacttcgcgtatatt 26625665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 36658991 - 36659089
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  36658991 ttttttgtgtaaagccatattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgctgttttggacttcgcgtatatt 36659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 43183813 - 43183715
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  43183813 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgtttttttggacttcgcgtatatt 43183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 8394957 - 8395046
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8394957 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 8395046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 37001583 - 37001485
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  37001583 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattaaatctctcggttgcttttttggacttcgcgtatatt 37001485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 34468668 - 34468579
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  34468668 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctatcggttgcttttttggacttcgcgtatatt 34468579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 36631649 - 36631738
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  36631649 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgtttttttggacttcgcgtatatt 36631738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 3113454 - 3113367
Alignment:
Q  67 aagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  3113454 aagccatattttaacgttcttaactcgcc-tctaggaaatcataaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 3113367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 8867075 - 8866977
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  8867075 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacatatcatgaaaaaattcaatctctcggttgcttttttggacttcacgtatatt 8866977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 38637726 - 38637628
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  38637726 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttatttttttggacttcgcgtatatt 38637628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 33686386 - 33686484
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||| | | ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  33686386 ttttttgtgtaaatccagattttaacgttcttaactcacc-tctaagaaatcatgaaaaaattcaatctctcggttgctttttaggacttcacgtatatt 33686484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 14776440 - 14776351
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||  ||| |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  14776440 taaagccatattttaacgttcttaactcgccg-ctgggaagtcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 14776351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 7003450 - 7003547
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||| || || ||||| |||||||||||||| | ||||| | ||||||||||||||||||||||||||||    
T  7003450 ttttttgtgtaaagccatattttaacgttcttaaatcacc-tctaacaaatcatgaaaaaaat-aatctatcggttgcttttttggacttcgcgtatatt 7003547  T

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Target: chr7; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 7049321 - 7049418
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||| || || ||||| |||||||||||||| | ||||| | ||||||||||||||||||||||||||||    
T  7049321 ttttttgtgtaaagccatattttaacgttcttaaatcacc-tctaacaaatcatgaaaaaaat-aatctatcggttgcttttttggacttcgcgtatatt 7049418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 11020025 - 11019991
Alignment:
Q  198 atgttatctaattacagggtcaatttttcagactt 232  Q
    ||||||| |||||||||||||||||||||||||||    
T  11020025 atgttatttaattacagggtcaatttttcagactt 11019991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 15959290 - 15959191
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15959290 tttttctgtgtaaagcgatattttaacgttcttaactcgcc-tctaagaaatcatgaaaaaattcaatctcttgattgcttttttggacttcgcgtatat 15959192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 192648 - 192747
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  192648 tttttttgtgtaaagccatattttaatgttcttaacacgcc-tctaagaaatcatgaaaaaattcaatctcttggttgcttttttagacttcgcgtatat 192746  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 31681189 - 31681287
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31681189 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 31681287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 33431143 - 33431241
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  33431143 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 33431241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 39656861 - 39656772
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39656861 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 39656772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 31501062 - 31500963
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| |||||||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  31501062 tttttttgtgtaaagccatattttaacgttcttaactcgca-tctaacaaatcatgaaaaaattcaatctctcggttgtttttttggacttcgcgtatat 31500964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 37255428 - 37255526
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37255428 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaattatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 37255526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 10036740 - 10036829
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10036740 taaagccatattttaacgttcttaactcacc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 10036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 16333234 - 16333145
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16333234 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctatcggttgcttttttggacttcgcgtatatt 16333145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 1775712 - 1775623
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  1775712 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgataaaattcaatctctcgattgcttttttggacttcgcgtatatt 1775623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 13818810 - 13818899
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  13818810 taaagccatattttaacgttcttaactcgcc-tctaggaaataatgaaaaaattcaatctctcggttgcttttttggacttcgtgtatatt 13818899  T

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Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 16155724 - 16155813
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||  | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16155724 taaagccatattttaacgttcttaactcgca-tgtaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 16155813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 12278194 - 12278101
Alignment:
Q  61 tgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||||  ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  12278194 tgtgtaaagccgtattttaacattcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcatgtatatt 12278101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 36292954 - 36292865
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36292954 taaagccatattttaacgttcttaactcgccg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 36292865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 19986286 - 19986366
Alignment:
Q  74 attttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  19986286 attttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcaattgcttttttggacttcgcgtatatt 19986366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 17331961 - 17331864
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||||    
T  17331961 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaataaatcatgaaaaa-ttcaatctctcggttgctttttaggactttgcgtatatt 17331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 39435530 - 39435616
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtat 152  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  39435530 taaagccatattttaacgttcttaactcgccg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcacgtat 39435616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 26282651 - 26282562
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  26282651 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 26282562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 36292216 - 36292276
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  36292216 cctctaagaaatcatgaaaaaattcaatctctcagtttcttttttggacttctcgtatatt 36292276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 43069703 - 43069764
Alignment:
Q  95 cctctaagaaatcatgaaaaaa-ttcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||    
T  43069703 cctctaagaaatcatgaaaaaaattgaatctctcggttgcttttttggacttctcgtatatt 43069764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 31272271 - 31272322
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttc 146  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  31272271 cctctaagaaatcatgaaaaaattcaatctctaagttgattttttggacttc 31272322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 30297301 - 30297220
Alignment:
Q  72 atattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||| ||||||||  ||| ||||| |||||||||||||||| ||||| | ||||||||||||||||||  |||||||    
T  30297301 atattttaactttcttaacatgcc-tctaaaaaatcatgaaaaaattaaatctttaggttgcttttttggactttacgtatat 30297220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 23034793 - 23034885
Alignment:
Q  64 gtaaagctatattttaacgttcttaactcgccctctaagaaatcatga--aaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||| |||||||||||||||||||  ||| ||||| |||| |  |  ||||||||||||||| | ||||||||||||||||| ||||||||    
T  23034793 gtaaagccatattttaacgttcttaacatgcc-tctaaaaaataaaaataaaaaattcaatctctagattgcttttttggacttcacgtatatt 23034885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 28801840 - 28801878
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttca 234  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  28801840 acatgttatttaattacaaggtcaatttttcagacttca 28801878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 37255600 - 37255628
Alignment:
Q  129 gttgcttttttggacttcgcgtatattca 157  Q
    |||||||||||||||||||||||||||||    
T  37255600 gttgcttttttggacttcgcgtatattca 37255628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 15209634 - 15209535
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  15209634 tttttctgtgtaaagccatattttaacgttcttaactcgcc-tctaagaaatcatgataaaattcaatctcttggtttcttttttggacttcgcgtatat 15209536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 17446115 - 17446214
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17446115 tttttttgtgtaaagccatattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatat 17446213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 3829805 - 3829904
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  3829805 tttttttgtgtaaagctagattttaacgttcttaactcgcc-tctaagaaatcatgaaaaaattcaatctctcagttgtttttttggacttcgcgtatat 3829903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 321016 - 320923
Alignment:
Q  61 tgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  321016 tgtgtaaagccatattttaacgttcttaactcgcc-tctaaaaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcatatatt 320923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 42310275 - 42310186
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  42310275 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattaaatctctcggttgcttttttggacttcgcgtatatt 42310186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 7434255 - 7434342
Alignment:
Q  67 aagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  7434255 aagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgtttttttggacttcgcgtatatt 7434342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 23313827 - 23313916
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  23313827 taaagccatattttaacgttcttaactagcc-tctaggaaatcatgaaaaaattcaatctctcgattgcttttttggacttcgcgtatatt 23313916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 35908352 - 35908450
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  35908352 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaattatgaaaaaattcaatcactcagttgcttttttggacttcgcgtatatt 35908450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 32981392 - 32981303
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  32981392 taaagccatattttaactttcttaacttgcc-tctaagaaatcatgaaaaaattcaatctctcggtttcttttttggacttcgcatatatt 32981303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 41971600 - 41971502
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||||||| | |||||| |  ||||||| |||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  41971600 tttttctgtgtaaaaccatattt-attgttcttagctcgcc-tctaagaaatcatgaaaaaaatcaatctcttaattgcttttttggacttcgcgtatat 41971503  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 11957687 - 11957604
Alignment:
Q  71 tatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||||||||| || | |||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||||    
T  11957687 tatagtttaacgttcttaactctcc-tataagaaattatgaaaaaattcaatctctcggtttcttttttggatttcgcatatatt 11957604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 15209490 - 15209452
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttca 234  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  15209490 acatgttatttaattacagggtcaatttttcagacttca 15209452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 41971457 - 41971419
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttca 234  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  41971457 acatgttatttaattacagggtcaatttttcaggcttca 41971419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 35908523 - 35908552
Alignment:
Q  128 ggttgcttttttggacttcgcgtatattca 157  Q
    ||||||||||||||||||||||||||||||    
T  35908523 ggttgcttttttggacttcgcgtatattca 35908552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 30110785 - 30110882
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    ||||| |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110785 tttttttgtgtaaagccatattttaacgttcttaactcgcctt-taagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtata 30110882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 3292241 - 3292143
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3292241 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 3292143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 44157447 - 44157545
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44157447 ttttttgtgtaaagccatattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctcttgattgcttttttggacttcgcgtatatt 44157545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 50204431 - 50204333
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50204431 ttttttgtgtaaagccatattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 50204333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 48130800 - 48130900
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaatt-caatctcttggttgcttttttggacttcgcgtata 153  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48130800 tttttctatgtaaagccatattttaacgttcttaactcgcc-tctaagaaatcatgaaaaaatttcaatctcttggtttcttttttggacttcgcgtata 48130898  T
Q  154 tt 155  Q
    ||    
T  48130899 tt 48130900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 6689573 - 6689482
Alignment:
Q  63 tgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6689573 tgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 6689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 25931543 - 25931632
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25931543 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 25931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 36381682 - 36381593
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36381682 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 36381593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 7769385 - 7769483
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  7769385 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttacttttttggacttcgcgtatatt 7769483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 28876658 - 28876560
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  28876658 ttttttgtgtaaagccatattttaacgttcttaactcgcc-tctgacaaatcatgaaaaaattcaatctctcgattgcttttttggacttcgcgtatatt 28876560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 35546774 - 35546872
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  35546774 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctttcggttgctttcttggacttcgcgtatatt 35546872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 13390791 - 13390693
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||| ||  ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  13390791 ttttttgtgtaaagccatattttaacgttcttaacttgcg-tctaacaaatcatgaaaaaattcgatctctcggttgcttttttggacttcgcgtatatt 13390693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 13398873 - 13398775
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| ||||||||| |||||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  13398873 ttttttgtgtaaagccatattttaatgttcttaactcgct-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggatttcgcgtatatt 13398775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 33135788 - 33135690
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| ||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  33135788 ttttttgtgtaaagccatattttaacgttctcaacttgcc-tctaacaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 33135690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 6236341 - 6236430
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  6236341 taaagccatattttaactttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttaaacttcgcgtatatt 6236430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 26449546 - 26449645
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| | ||||||||||| |||||||||  |||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||    
T  26449546 tttttttgtgtaaagccagattttaacgtttttaactcgca-tctaagaaatcacgaaaaaattcaatctctcgattgcttttttgaacttcgcgtatat 26449644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 30216089 - 30215992
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||| ||||||  |||||||| |||||||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  30216089 ttttttgtttaaagccgtattttaatgttcttaactcgcc-tctaacaaatcatgaaaaaaatcaa-ctcttggttgcttttttggacttcgcgtatatt 30215992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 42333117 - 42333019
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||| |||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  | |||||||||||||||||||||||    
T  42333117 ttttttgtgcaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcgaattcttttttggacttcgcgtatatt 42333019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 26438612 - 26438523
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  26438612 taaagccatattttaacgttcttaactcgccg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 26438523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 40529918 - 40530007
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| ||||  ||||| ||||||||||||||| || |||||||||| |||||||||||||||||    
T  40529918 taaagccatattttaacgttcttaactcgcc-tctagaaaatcgtgaaaaaattcaatccctcggttgcttttctggacttcgcgtatatt 40530007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 43356738 - 43356827
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43356738 taaagccatattttaacgttcttaactcgccg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 43356827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 48990143 - 48990223
Alignment:
Q  74 attttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||| |||||||| ||||||    
T  48990143 attttaacgttcttaactcgcc-tctatgaaatcattaaaaaattcaatctctcggttgcttttttagacttcgcatatatt 48990223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 1818517 - 1818577
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  1818517 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtatatt 1818577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 29995304 - 29995244
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  29995304 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtatatt 29995244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 10352202 - 10352144
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  10352202 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtata 10352144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 13013022 - 13013111
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13013022 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 13013111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 30076957 - 30076899
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  30076957 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtata 30076899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 34406617 - 34406528
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||   ||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  34406617 taaagccatattttaacgttcttaactcgccg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggactttgcgtatatt 34406528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 47501607 - 47501696
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  47501607 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 47501696  T

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Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 43142911 - 43142831
Alignment:
Q  73 tattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |  | ||||||| |||||||||||||||    
T  43142911 tattttaatgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcgaattctttttt-gacttcgcgtatatt 43142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 17510555 - 17510508
Alignment:
Q  72 atattttaacgttcttaactcgccctctaagaaatcatgaaaaaattca 120  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17510555 atattttaacgttcttaactcg-cctctaggaaatcatgaaaaaattca 17510508  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 25931720 - 25931760
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttcatgt 237  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  25931720 acatgttatttaattacagggtcaa-ttttcagacttcatgt 25931760  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 30110931 - 30110964
Alignment:
Q  201 ttatctaattacagggtcaatttttcagacttca 234  Q
    |||| |||||||||||||||||||||||||||||    
T  30110931 ttatttaattacagggtcaatttttcagacttca 30110964  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 48130945 - 48130982
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttc 233  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  48130945 acatgttatttaattacatggtcaatttttcagacttc 48130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 20130147 - 20130198
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaat 117  Q
    |||||| |||||||||||||||||||||||| | |  ||||||||||||||||    
T  20130147 taaagccatattttaacgttcttaactcgccgt-tgggaaatcatgaaaaaat 20130198  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 45183802 - 45183901
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45183802 tttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatat 45183900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 6930238 - 6930140
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6930238 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 6930140  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 5136114 - 5136214
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaa-aattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    |||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5136114 tttttctgtgtaaagccatattttaacgatcttaactcacc-tctaagaaatcatgaaaaaaattcaatctcttggttgcttttttggacttcgcgtata 5136212  T
Q  154 tt 155  Q
    ||    
T  5136213 tt 5136214  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 33041773 - 33041871
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  33041773 ttttttgtgtaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaaatcaatctcttggctgcttttttggacttcgcgtatatt 33041871  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 34083455 - 34083366
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  34083455 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtatatt 34083366  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 35514820 - 35514917
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  35514820 ttttttgtgtaaagccatattttaacgttcttaactcg-cctctaaaaaaacatgaaaaaattcaatctc-tcgttgcttttttggacttcgcgtatatt 35514917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 40081068 - 40080986
Alignment:
Q  72 atattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40081068 atattttaacattcttaactagcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 40080986  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 19390980 - 19391069
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  19390980 taaagccatattttaacgttcttaactcgccg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 19391069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 27936009 - 27936102
Alignment:
Q  62 gtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaa-aattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||| | ||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  27936009 gtgtaaagccaaattttaacgttctgaactcgcc-tctaagaaatcatgaaaaaaattcaatctctcggttgtttttttggacttcgcgtatatt 27936102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 6268759 - 6268670
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  6268759 taaagccatattttaacgttcttaactcgccg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcacgtatatt 6268670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 22967777 - 22967688
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22967777 taaagccatattttaacgttcttaactcgtcg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 22967688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 39772624 - 39772713
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39772624 taaagccatattttaacgttcttaactcgccg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 39772713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 6502912 - 6502814
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||| |||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  | |||||||||||||||| ||||||    
T  6502912 ttttttgtgcaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcgaattcttttttggacttcgcatatatt 6502814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 45336719 - 45336777
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  45336719 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtata 45336777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 11017597 - 11017516
Alignment:
Q  73 tattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |  | |||||||||||||| ||||||||    
T  11017597 tattttaacgttcttaactcgcctt-taacaaatcatgaaaaaattcaatctctcgaattcttttttggacttcacgtatatt 11017516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 19564822 - 19564772
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggactt 145  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19564822 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggactt 19564772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 29564465 - 29564409
Alignment:
Q  97 tctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| ||||||| ||||| |||||||| | ||||||||||||||||||| |||||||    
T  29564465 tctaaaaaatcat-aaaaatttcaatctttaggttgcttttttggacttcacgtatat 29564409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 12756182 - 12756084
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12756182 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 12756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 45419405 - 45419503
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45419405 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 45419503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 7071878 - 7071779
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    |||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7071878 tttttctgtgtaaagccatattttaacgttcataactcgac-tctaagaaatcatgaaaaatttcaatctcttgattgcttttttggacttcgcgtatat 7071780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 26162040 - 26161947
Alignment:
Q  61 tgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26162040 tgtgtaaagccagattttaacgttcttaactcacc-tctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 26161947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 42442818 - 42442907
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42442818 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 42442907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 2286740 - 2286829
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2286740 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcacgtatatt 2286829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 32126522 - 32126433
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  32126522 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctatcggttgcttttttggacttcgcgtatatt 32126433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 771557 - 771655
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  771557 tttttttgtgtaaagccatattttaacgttcttaactcgcc-tgtaagaaatcatgaaaa-attcaatctctcggtagcttttttggacttcgcgtatat 771654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 35963525 - 35963612
Alignment:
Q  67 aagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35963525 aagccatattttaacgttcttaactcgcc-tctaggaaataatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 35963612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 16405969 - 16406051
Alignment:
Q  72 atattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16405969 atattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaatccaatctctcggttgcttttttggacttcgcgtatatt 16406051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 18982378 - 18982466
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18982378 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaa-attcaatctctcggttgcttttttggacttcgcgtatatt 18982466  T

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Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 8058687 - 8058589
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| ||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  8058687 ttttttgtgtaaagccatattttaacgttctcaacttgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttgaacttcgtgtatatt 8058589  T

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Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 41250966 - 41250877
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41250966 taaagccatattttaacgttcttaactcgccg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 41250877  T

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Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 6403137 - 6403048
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  6403137 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 6403048  T

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Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 17444369 - 17444280
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||| ||  ||  |||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  17444369 taaagccatattttaacgttcttaactcaccg-ctgggaaatcatgaaaaaattcaatctctcagttgcttttttggacttcacgtatatt 17444280  T

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Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 45122033 - 45122115
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgctttttt 139  Q
    ||||| |||||||||| ||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| ||||||    
T  45122033 tttttttgtgtaaagccatattttaacgttcttaacacg-gctctaagaaatcatg-aaaaattcaatctcttggttgttttttt 45122115  T

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Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 4554535 - 4554475
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaa 116  Q
    ||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  4554535 tttttttgtgtaaagccatattttaatgttcttaactcg-cctctaagaaatcatgaaaaaa 4554475  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 17373648 - 17373700
Alignment:
Q  103 aaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||||| | |  ||||||||||| |||||||||||    
T  17373648 aaatcatgaaaaaattcaatctctagatcacttttttggacctcgcgtatatt 17373700  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 31581020 - 31580980
Alignment:
Q  112 aaaaattcaatctcttggttgcttttttggacttcgcgtat 152  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  31581020 aaaaattcaatctctcagttgcttttttggacttcgcgtat 31580980  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 7071730 - 7071692
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttca 234  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  7071730 acatgttatttaattatagggtcaatttttcagacttca 7071692  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 9878043 - 9878141
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9878043 ttttttgtgtaaagccatattttaacgtttttaactcgcc-tctaacaaatcatgaaaaaatttaatctcttggttgcttttttggacttcgcgtatatt 9878141  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 15839106 - 15839195
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15839106 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 15839195  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 2728164 - 2728065
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  2728164 tttttgtgtgtaaagccagattttaacgttctcaactcgcc-tctaagaaatcatgaaaaaattcaatctctcggttgcttttttggatttcgcgtatat 2728066  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 16787369 - 16787271
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||||||| |  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16787369 ttttttgtgtaaaaccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 16787271  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 42231778 - 42231858
Alignment:
Q  74 attttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  42231778 attttaacgttcttaactcgct-tctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttcgtgtatatt 42231858  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 3436076 - 3436154
Alignment:
Q  76 tttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  3436076 tttaacgttcttaactcgcc-tctaagaaatcatgaaaaaattcaatttgttggttgcttttttggactttgcgtatatt 3436154  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 29727718 - 29727632
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtat 152  Q
    |||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  29727718 taaagccatattttaacgttcttaactcgcc-tctaggaaattatgaaaaaattcaatctctcggttgcttttttggacttcgtgtat 29727632  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 3648125 - 3648036
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  3648125 taaagccatattttaacgtttttaactcgcc-tctaggaaatcatgtaaaaattcaatctctcggtttcttttttggacttcgcgtatatt 3648036  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 4404830 - 4404929
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatat 154  Q
    ||||| |||| |||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  | | ||||||||||||||||||||    
T  4404830 tttttttgtgcaaagccgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcgaattcctttttggacttcgcgtatat 4404928  T

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Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 7278854 - 7278947
Alignment:
Q  62 gtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaa-ttcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||| ||||||    
T  7278854 gtgtaaagccatattttaacattcttaactcgcc-tctaacaaatcatgaaaaaaattgaatctctcggtttcttttttggacttcgcatatatt 7278947  T

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Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 24019724 - 24019635
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  24019724 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 24019635  T

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Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 28524032 - 28524121
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  28524032 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 28524121  T

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Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 39915348 - 39915437
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39915348 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 39915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 36409346 - 36409406
Alignment:
Q  95 cctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  36409346 cctctaagaaatcatgaaaaaattcaatctctcggttgcttttttgtacttctcgtatatt 36409406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 34136128 - 34136056
Alignment:
Q  73 tattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttc 146  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  | ||||||||||||||    
T  34136128 tattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaattcaatctctcgaattcttttttggacttc 34136056  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 40470069 - 40470031
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttca 234  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  40470069 acatgttatttaattacagggtcaattttttagacttca 40470031  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 9878186 - 9878226
Alignment:
Q  196 acatgttatctaattacagggtcaatttttcagacttcatgt 237  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  9878186 acatgttatttaattacagggtcaa-ttttcagacttcatgt 9878226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 28997552 - 28997650
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  28997552 ttttttgtgtaaagctgtattttaacgttcttaactcgcc-tctaacaaatcatgaaaaaagtcaatctctcggttgcttttttggacttcgcgtatatt 28997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 13838632 - 13838721
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13838632 taaagccatattttaacgttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcggttgtttttttggacttcgcgtatatt 13838721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 31028300 - 31028209
Alignment:
Q  55 tttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcg 147  Q
    ||||| |||||||| | |||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||||||||||||    
T  31028300 tttttttgtgtaaaaccatattttaacgttcttaactcgcc-tctaagatatcatgaaatgattcaatctcttggttggttttttggacttcg 31028209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 34252965 - 34253054
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||    
T  34252965 taaagccatattttaacgtttttaactcgcc-tctaggaaatcatgaaaaaatttaatctttcggttgtttttttggacttcgcgtatatt 34253054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 34948143 - 34948071
Alignment:
Q  82 gttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  34948143 gttcttaactcgcc-tctaggaaatcatgaaaaaattcaatctctcgattgcttttttggacttcgcgtatatt 34948071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 33228656 - 33228597
Alignment:
Q  96 ctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  33228656 ctctaagaaatcatgaaaaaattcaatctctcggttgcttttttggacttctcgtatatt 33228597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 399451 - 399540
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  399451 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 399540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 29744130 - 29744189
Alignment:
Q  95 cctctaagaaatcatgaaaa-aattcaatctcttggttgcttttttggacttcgcgtata 153  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  29744130 cctctaagaaatcatgaaaaaaattcaatctctcggttgtttttttggacttctcgtata 29744189  T

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Target: scaffold0154 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 32038 - 32136
Alignment:
Q  56 ttttctgtgtaaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||| |||| ||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32038 ttttttgtgcaaagccatattttaacgttcttaacttgcc-tctaagaaaacatgaaaaaattcaatctctcggttgcttttttggacttcgcgtatatt 32136  T

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Target: scaffold0069 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 18393 - 18482
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  18393 taaagccatattttaacgttcttaactcgccg-ctgggaaatcatgaaaaaattctatctctcagttgcttttttggacttcgcgtatatt 18482  T

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Target: scaffold0002 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 479790 - 479701
Alignment:
Q  65 taaagctatattttaacgttcttaactcgccctctaagaaatcatgaaaaaattcaatctcttggttgcttttttggacttcgcgtatatt 155  Q
    |||||| |||||||||||||||||||||| |  ||   ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  479790 taaagccatattttaacgttcttaactcgtcg-ctggaaaatcatgaaaaaattcaatctctcagttgcttttttggacttcgcgtatatt 479701  T

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