View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_high_40 (Length: 236)
Name: NF4115_high_40
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 12802927 - 12803094
Alignment:
| Q |
1 |
tttatctagacactcattttcaacttgagagatttcaagtttaaatgaaatttctttatatattacagcaattgaaggaagaagccgaaaacatgatgaa |
100 |
Q |
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| T |
12802927 |
tttatctagacactcattttcaacttgagagacttcaagtttaaatgaaatttctttaaatattacagcaattgaaggaagaagcagaaaacatgatgaa |
12803026 |
T |
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| Q |
101 |
gaagattgaccttcttgagacttcaaaacggttaattaaagatcttgaatttctattcatgatgacta |
168 |
Q |
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| T |
12803027 |
gaagattgaccttcttgagacttcaaaacggttaattaaagatcttgaatttctgttcatgatgacta |
12803094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 12779370 - 12779504
Alignment:
| Q |
2 |
ttatctagacactcattttcaacttgagagatttcaag-tttaaatgaaatttctttatatattacagcaattgaaggaagaagccgaaaacatgatgaa |
100 |
Q |
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|||| ||||||||| ||||||||| | ||| ||||| ||| |||||| || | ||| ||||||||||| |||||||||||||| |||||||||||||| |
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| T |
12779370 |
ttatttagacactccatttcaacttaaaagacttcaaaatttgaatgaatttgccttacatattacagcagttgaaggaagaagcagaaaacatgatgaa |
12779469 |
T |
|
| Q |
101 |
gaagattgaccttcttgagacttcaaaacggttaa |
135 |
Q |
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| T |
12779470 |
aaagattgaccttcttgagacttcaaaacggttaa |
12779504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 12803112 - 12803141
Alignment:
| Q |
192 |
caatattcaatgtctaatttctctgaaaag |
221 |
Q |
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| T |
12803112 |
caatattcaatgtctaatttctctgaaaag |
12803141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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