View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4115_high_41 (Length: 234)
Name: NF4115_high_41
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_high_41 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 16580524 - 16580314
Alignment:
| Q |
14 |
aagaagcattgtgacaaccatgacatgatccttaacat---cgggaggaccattgaatgttttttgtcactgatctcgaggaagcgactgaaattcttac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16580524 |
aagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttgaatgttttttgtcactgatctcgagcaagcgactgaaattcttac |
16580425 |
T |
|
| Q |
111 |
tgatgatcttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16580424 |
tgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
16580325 |
T |
|
| Q |
211 |
tatgtgcatat |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
16580324 |
tatgtgcatat |
16580314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 16614856 - 16615066
Alignment:
| Q |
14 |
aagaagcattgtgacaaccatgacatgatccttaacat---cgggaggaccattgaatgttttttgtcactgatctcgaggaagcgactgaaattcttac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16614856 |
aagaagcattgtgacaaccatgacatgatccttaacattttcgggaggacagttgaatgttttttgtcactgatctcgagcaagcgactgaaattcttac |
16614955 |
T |
|
| Q |
111 |
tgatgatcttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16614956 |
tgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
16615055 |
T |
|
| Q |
211 |
tatgtgcatat |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
16615056 |
tatgtgcatat |
16615066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 16874384 - 16874174
Alignment:
| Q |
14 |
aagaagcattgtgacaaccatgacatgatccttaacat---cgggaggaccattgaatgttttttgtcactgatctcgaggaagcgactgaaattcttac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||| |
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|
| T |
16874384 |
aagaagcattgtgacaaccatgacatgatccataacattttcgggaggaccgttgaatgttttttgtcactgatctcgagcaagtggctgaaattcttac |
16874285 |
T |
|
| Q |
111 |
tgatgatcttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16874284 |
tgatgatcttacgcttcacgtcaggaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
16874185 |
T |
|
| Q |
211 |
tatgtgcatat |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
16874184 |
tatgtgcatat |
16874174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 16572496 - 16572329
Alignment:
| Q |
53 |
gggaggaccattgaatgttttttgtcactgatctcgaggaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattggctgcaatat |
152 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
16572496 |
gggagaaccgttgaatgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaatattggctgcaatat |
16572397 |
T |
|
| Q |
153 |
tgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatttatgtgcata |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16572396 |
tgaaaacttccaatagcatatcagatattagatacactgattccagtagctaaagatttatgtgcata |
16572329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 16977491 - 16977692
Alignment:
| Q |
14 |
aagaagcattgtgacaaccatgacatgatccttaacat---cgggaggaccattgaatgttttttgtcactgatctcgaggaagcgactgaaattcttac |
110 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| | || |||| ||||| || ||| ||||||||||||| |||| | ||||||| || |
|
|
| T |
16977491 |
aagaagccttgttacaaccatgacatgatccttaacattttctggtagaccgctgaattttgtttatcactgatctcgaaaaagcaatggaaattcgtat |
16977590 |
T |
|
| Q |
111 |
tgatgatcttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatt |
210 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||| || || ||||| || ||||||| |||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
16977591 |
tgatgatcttatgcttcgcgtcttgaacattggctgcatta-tgggaacttgcattagcatagaagatattatatacactgattccaggagctcaagatt |
16977689 |
T |
|
| Q |
211 |
tat |
213 |
Q |
| |
|
||| |
|
|
| T |
16977690 |
tat |
16977692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 16691581 - 16691638
Alignment:
| Q |
70 |
ttttttgtcactgatctcgaggaagcgactgaaattcttactgatgatcttacgcttc |
127 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||| |
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|
| T |
16691581 |
ttttttgtcaccgatctcgagcaagcgatggaaattcttactgatgatcttatgcttc |
16691638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 11196 - 11378
Alignment:
| Q |
14 |
aagaagcattgtgacaaccatgacatgatccttaacat--cgggaggaccattgaatgtttt-ttgtcactgatctcgaggaagcgactgaaattcttac |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
11196 |
aagaagccttgtgacaaccatgacatgatccttaacatttcaggaggaccgttgaatgtttttttgtcactgatctcgagcaagcgaaggaaattgttac |
11295 |
T |
|
| Q |
111 |
tgatgatcttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgat |
193 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
11296 |
tgatgatcttatgcttcgcatcatgaacattggctgcaatattgggaacttccagtagcatagcagatactagatacactgat |
11378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 21629274 - 21629071
Alignment:
| Q |
22 |
ttgtgacaaccatgacatgatccttaacat---cgggaggaccattgaatgtt-ttttgtcactgatctcgaggaagcgactgaaattcttactgatgat |
117 |
Q |
| |
|
|||||||| |||| ||||||||| |||||| | |||||||| ||||||||| |||||||||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
21629274 |
ttgtgacagccataacatgatccctaacattttcaggaggaccgttgaatgttcttttgtcacttatctcgagcaagcgatggaaattcttactgatgat |
21629175 |
T |
|
| Q |
118 |
cttacgcttcacgtcatgaacattggctgcaatattgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatttatgtgc |
217 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||| ||||||||||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||| |
|
|
| T |
21629174 |
cttacgcttcgtgtcatgaatattggctgccatattgggaacttccaataccatagcagatatgagatacactgattcaaggagctcaagatttatatgc |
21629075 |
T |
|
| Q |
218 |
atat |
221 |
Q |
| |
|
|||| |
|
|
| T |
21629074 |
atat |
21629071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 233714 - 233882
Alignment:
| Q |
54 |
ggaggaccattgaatgttt-tttgtcactgatctcgaggaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattggctgcaatat |
152 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| ||| || ||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| || | |
|
|
| T |
233714 |
ggaggaccggtgaatgtttgtttctcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgt |
233813 |
T |
|
| Q |
153 |
tgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatttatgtgcatat |
221 |
Q |
| |
|
| |||||||| |||||| ||||| | |||| |||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
233814 |
ttggaacttccagcagcatagcagatgtaagatgcactgattccaggagctcaagatttatatgcatat |
233882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 48298830 - 48298998
Alignment:
| Q |
54 |
ggaggaccattgaatgttt-tttgtcactgatctcgaggaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattggctgcaatat |
152 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| ||| || ||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| || | |
|
|
| T |
48298830 |
ggaggaccggtgaatgtttgtttctcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgt |
48298929 |
T |
|
| Q |
153 |
tgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatttatgtgcatat |
221 |
Q |
| |
|
|| |||||||| |||||| ||||| | |||| |||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
48298930 |
tgggaacttccagcagcatagcagatgtaagatgcactgattccaggagctcaagatttatatgcatat |
48298998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 7391781 - 7391613
Alignment:
| Q |
54 |
ggaggaccattgaatgttt-tttgtcactgatctcgaggaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattggctgcaatat |
152 |
Q |
| |
|
|||||||| ||||||||| ||| || |||| ||| || ||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| || | |
|
|
| T |
7391781 |
ggaggaccggtgaatgtttgtttctcgctgacctcaagcaagcgtcggaaattcttactgatgatcttacgctttgcatcatgaacattggctgccatgt |
7391682 |
T |
|
| Q |
153 |
tgaaaacttccaatagcataacagatattagatacactgattccagtagctaaagatttatgtgcatat |
221 |
Q |
| |
|
|| |||||||| |||||| ||||| | |||| |||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
7391681 |
tgggaacttccagcagcatagcagatgtaagatgcactgattccaggagctcaagatttatatgcatat |
7391613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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