View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_10 (Length: 488)

Name: NF4115_low_10
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_10
NF4115_low_10
[»] chr1 (1 HSPs)
chr1 (1-471)||(31443180-31443650)
[»] chr7 (20 HSPs)
chr7 (395-466)||(20414272-20414343)
chr7 (395-468)||(13888648-13888721)
chr7 (395-469)||(7327581-7327655)
chr7 (399-452)||(21219301-21219354)
chr7 (395-466)||(20455901-20455972)
chr7 (234-269)||(22063262-22063297)
chr7 (234-269)||(22069731-22069766)
chr7 (234-269)||(22080476-22080511)
chr7 (234-269)||(22088213-22088248)
chr7 (231-270)||(22534241-22534280)
chr7 (313-355)||(7306669-7306711)
chr7 (313-355)||(7311764-7311806)
chr7 (399-469)||(7311862-7311932)
chr7 (231-277)||(22525586-22525632)
chr7 (122-175)||(13888381-13888434)
chr7 (232-281)||(21210846-21210895)
chr7 (231-275)||(7327771-7327815)
chr7 (395-427)||(15572519-15572551)
chr7 (394-426)||(19326569-19326601)
chr7 (224-268)||(36262641-36262685)
[»] chr4 (3 HSPs)
chr4 (230-276)||(11982094-11982140)
chr4 (235-268)||(831887-831920)
chr4 (230-270)||(2910628-2910668)
[»] scaffold0064 (1 HSPs)
scaffold0064 (142-183)||(23904-23945)
[»] scaffold0128 (1 HSPs)
scaffold0128 (230-270)||(8203-8243)


Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 31443180 - 31443650
Alignment:
Q  1 tacctagatcaagcgaaataatcacaagttgaggagcaagatcaccgtcctgaataaaccctaaccaattaagagtggaattcaaatgtacaccagcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31443180 tacctagatcaagcgaaataatcacaagttgaggagcaagatcaccgtcctgaataaaccctaaccaattaagagtggaattcaaatgtacaccagcata 31443279  T
Q  101 caacgttctattactacaaatagagaactgaagaagcctcgcagggaaactttgaatatttctccaaatattattacggaaacaaataattcccacctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  31443280 caacgttctattactacaaatagagaactgaagaagcctcgcagggaaactttgaatatttctccaaatattattacggaaacaaatgattcccaccttt 31443379  T
Q  201 gttgtcatttcactatccggatataacgtcacaaccttataagtttcggttgaattatcataaccaaacataaactcccaacattgcaaacgattagcac 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31443380 gttgtcatttcactatccggatataacgccacaaccttataagtttgggttgtattatcataaccaaacataaactcccaacattgcaaacgattagcac 31443479  T
Q  301 taaaatacaacttatctgatattgtcctggtggcggggttccagatacggagccacatttcttcaaactcctcaacatcggcaacacaaccactcaagca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31443480 taaaatacaacttatctgatattgtcctggtggcggggttccagatacggagccacatctcttcaaactcctcaacatccgcaacacaaccactcaagca 31443579  T
Q  401 gaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatccttgg 471  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31443580 gaccaatccattgcaggaaccaacaactccaggacagtccttctcaatcaattgatagtaaggatccttgg 31443650  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 20414343 - 20414272
Alignment:
Q  395 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatc 466  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||| |||| ||||||| ||||||    
T  20414343 caagcagaccaatccattgcaggaaccaacaacttcacgacagcccttatcattcaactgatagtgaggatc 20414272  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 13888648 - 13888721
Alignment:
Q  395 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatcct 468  Q
    |||||||||||||||||||||||||||||||||   | |||||||||| || |||| | |||||||||||||||    
T  13888648 caagcagaccaatccattgcaggaaccaacaacatgacgacagtccttgtcgatcagtagatagtaaggatcct 13888721  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 7327655 - 7327581
Alignment:
Q  395 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatcctt 469  Q
    ||||||||||||||||||||| ||||||| |||| || |||| ||||| |||  |||| |||| |||||||||||    
T  7327655 caagcagaccaatccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatcctt 7327581  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 21219301 - 21219354
Alignment:
Q  399 cagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaat 452  Q
    |||||||||||||||||||||||||||||| ||  ||| ||||||||| |||||    
T  21219301 cagaccaatccattgcaggaaccaacaacttcacaacaatccttatcattcaat 21219354  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 20455972 - 20455901
Alignment:
Q  395 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatc 466  Q
    |||||| |||||||||||||||||||||| || |  | |||| ||||||||| |||| | ||||||||||||    
T  20455972 caagcaaaccaatccattgcaggaaccaataaatttacgacaatccttatcattcaactcatagtaaggatc 20455901  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 22063297 - 22063262
Alignment:
Q  234 accttataagtttcggttgaattatcataaccaaac 269  Q
    |||||||||||||| |||||||||||||||||||||    
T  22063297 accttataagtttctgttgaattatcataaccaaac 22063262  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 22069766 - 22069731
Alignment:
Q  234 accttataagtttcggttgaattatcataaccaaac 269  Q
    |||||||||||||| |||||||||||||||||||||    
T  22069766 accttataagtttctgttgaattatcataaccaaac 22069731  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 22080511 - 22080476
Alignment:
Q  234 accttataagtttcggttgaattatcataaccaaac 269  Q
    |||||||||||||| |||||||||||||||||||||    
T  22080511 accttataagtttctgttgaattatcataaccaaac 22080476  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 22088248 - 22088213
Alignment:
Q  234 accttataagtttcggttgaattatcataaccaaac 269  Q
    |||||||||||||| |||||||||||||||||||||    
T  22088248 accttataagtttctgttgaattatcataaccaaac 22088213  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 22534280 - 22534241
Alignment:
Q  231 acaaccttataagtttcggttgaattatcataaccaaaca 270  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  22534280 acaaccttataggtgtcggttgaattatcataaccaaaca 22534241  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 7306669 - 7306711
Alignment:
Q  313 tatctgatattgtcctggtggcggggttccagatacggagcca 355  Q
    |||| |||||| ||||||||||||||||||||| |||||||||    
T  7306669 tatcagatattttcctggtggcggggttccagaaacggagcca 7306711  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 7311764 - 7311806
Alignment:
Q  313 tatctgatattgtcctggtggcggggttccagatacggagcca 355  Q
    |||| |||||| ||||||||||||||||||||| |||||||||    
T  7311764 tatcagatattttcctggtggcggggttccagaaacggagcca 7311806  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 7311862 - 7311932
Alignment:
Q  399 cagaccaatccattgcaggaaccaacaactccaggacagtccttatcaatcaattgatagtaaggatcctt 469  Q
    ||||||||||||||||||||||||| |||| || |||| ||||| |||  |||  |||| |||||||||||    
T  7311862 cagaccaatccattgcaggaaccaataacttcacgacaatccttgtcatgcaacagataataaggatcctt 7311932  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 22525586 - 22525632
Alignment:
Q  231 acaaccttataagtttcggttgaattatcataaccaaacataaactc 277  Q
    ||||| ||||| || ||||||||||||||||||||||||| ||||||    
T  22525586 acaactttataggtgtcggttgaattatcataaccaaacacaaactc 22525632  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 13888381 - 13888434
Alignment:
Q  122 agagaactgaagaagcctcgcagggaaactttgaatatttctccaaatattatt 175  Q
    |||||| ||||||| ||| ||||| |||| ||||||||||| ||||||||||||    
T  13888381 agagaagtgaagaacccttgcaggaaaacattgaatatttcgccaaatattatt 13888434  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 21210846 - 21210895
Alignment:
Q  232 caaccttataagtttcggttgaattatcataaccaaacataaactcccaa 281  Q
    ||||||||||||| |||||| |||||||||||| ||||| ||||| ||||    
T  21210846 caaccttataagtgtcggttaaattatcataacaaaacacaaacttccaa 21210895  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 7327815 - 7327771
Alignment:
Q  231 acaaccttataagtttcggttgaattatcataaccaaacataaac 275  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||    
T  7327815 acaaccttataagtgttggttgaattatcataacaaaacacaaac 7327771  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 15572519 - 15572551
Alignment:
Q  395 caagcagaccaatccattgcaggaaccaacaac 427  Q
    ||||||||||||||||||||| |||||||||||    
T  15572519 caagcagaccaatccattgcatgaaccaacaac 15572551  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 426
Target Start/End: Original strand, 19326569 - 19326601
Alignment:
Q  394 tcaagcagaccaatccattgcaggaaccaacaa 426  Q
    |||| ||||||||||||||||||||||||||||    
T  19326569 tcaaacagaccaatccattgcaggaaccaacaa 19326601  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 36262685 - 36262641
Alignment:
Q  224 taacgtcacaaccttataagtttcggttgaattatcataaccaaa 268  Q
    |||| |||||||||||||||| || | ||||||||||||||||||    
T  36262685 taacatcacaaccttataagtctctgatgaattatcataaccaaa 36262641  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 11982094 - 11982140
Alignment:
Q  230 cacaaccttataagtttcggttgaattatcataaccaaacataaact 276  Q
    ||||||||||||||| ||| |||||||| |||||||||||| |||||    
T  11982094 cacaaccttataagtgtcgcttgaattaacataaccaaacacaaact 11982140  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 831920 - 831887
Alignment:
Q  235 ccttataagtttcggttgaattatcataaccaaa 268  Q
    |||||||||||||||||||| |||||||||||||    
T  831920 ccttataagtttcggttgaagtatcataaccaaa 831887  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 2910668 - 2910628
Alignment:
Q  230 cacaaccttataagtttcggttgaattatcataaccaaaca 270  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  2910668 cacaaccttataagtgtgagttgaattatcataaccaaaca 2910628  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 23945 - 23904
Alignment:
Q  142 cagggaaactttgaatatttctccaaatattattacggaaac 183  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  23945 cagggaaactttgaatatttctccagatattaataccgaaac 23904  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 8243 - 8203
Alignment:
Q  230 cacaaccttataagtttcggttgaattatcataaccaaaca 270  Q
    |||||| |||||||| ||||||||| |||||||||||||||    
T  8243 cacaactttataagtgtcggttgaactatcataaccaaaca 8203  T

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