View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_14 (Length: 445)
Name: NF4115_low_14
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 15682717 - 15682518
Alignment:
| Q |
14 |
agagcataatgatgaattggggtcacaaacattaataaagtcttcactctcattaatacacaaaccttaatattcttacgaagaattacatttattatct |
113 |
Q |
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| T |
15682717 |
agagcataatgatgaattggggtcacaaacattaataaagtcttcactctcattaatacacaaaccttaatattcttacgaagaattacatttattatct |
15682618 |
T |
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| Q |
114 |
tacatagatatggaaatccagatctatatcatacacataagtaacaagtcttcaaatcaaatttacatccaagataagccacaaagtaagtagttctcac |
213 |
Q |
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| T |
15682617 |
tacatagatatggaaatccagatctatatcatacacataagtaacaagtcttcaaatcaaatttacatccaagataagccacaaagtaagtagttctcac |
15682518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 15682427 - 15682309
Alignment:
| Q |
307 |
gttccacactttatatatgtaacacaaattaaaacttcnnnnnnnnnnnnncaataattagaaatatatatataaagagaagtgcaaccataatagactt |
406 |
Q |
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| T |
15682427 |
gttccacactttatatatgtaacacaaattaaaacttcaaaaaaaataaa--aataattagaaatatatatataaagagaggtgcaaccataatagactt |
15682330 |
T |
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| Q |
407 |
gcttgatctagcaaacaatcg |
427 |
Q |
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| T |
15682329 |
gcttgatctagcaaacaatcg |
15682309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 15592282 - 15592390
Alignment:
| Q |
93 |
gaagaattacatttattatcttacatagatatggaaatccagatctatat-catacacataagtaacaagtcttcaaatcaaatttacatccaagataag |
191 |
Q |
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| T |
15592282 |
gaagaattacatttattatcttacatagatatggaaatccagatctatatactttcac--aactcacaagtcttcaaatcaaatttacaaacaaaagaag |
15592379 |
T |
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| Q |
192 |
ccacaaagtaa |
202 |
Q |
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| T |
15592380 |
acacaaagtaa |
15592390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 15592555 - 15592612
Alignment:
| Q |
370 |
atatatatataaagagaagtgcaaccataatagacttgcttgatctagcaaacaatcg |
427 |
Q |
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| T |
15592555 |
atatatatgtagagagagttgtaacgataatagacttgcttgatctagcaaataatcg |
15592612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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