View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_16 (Length: 420)
Name: NF4115_low_16
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 30370707 - 30370480
Alignment:
| Q |
9 |
cagaacctgtgcatggatagagannnnnnntgttaatagaaaaatggttgttttaat-----aaaattgaatgacagtggaaggaacagaacagaagaag |
103 |
Q |
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| T |
30370707 |
cagaacctctgcatggatagagagggggggtgttaatagaaaaatggttgttttaatcaagcaaaattgaatgacggtggaaggaacagaacagaagaag |
30370608 |
T |
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| Q |
104 |
aaagacaaaacatgagaaagtgagtgatcgaatggaatgataaagaaggaaccttttggcttaggtttcttggagaagatattgagattcttcatcatcg |
203 |
Q |
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| T |
30370607 |
aaagacaaaacatgagaaagtgagtgatcgaatg-aatgataaagaatgaaccttttggcttaggtttcttggagaagatattgagattcttcatcatcg |
30370509 |
T |
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| Q |
204 |
tatttcttgtctccaaattcttcacacac |
232 |
Q |
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| T |
30370508 |
tatttcttgtctccaaattcttcacacac |
30370480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 30370458 - 30370409
Alignment:
| Q |
258 |
gatcgactgaatgataagtgattaaccagcaaactctgttcctattgatc |
307 |
Q |
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| T |
30370458 |
gatcgacagaatgataagtgattaaccagcaaactctgttcctatggatc |
30370409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 30370356 - 30370324
Alignment:
| Q |
363 |
atgaaacaaaatttaggtgaggtttttctatat |
395 |
Q |
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| T |
30370356 |
atgaaacaaaatttaggtgaggtttttctatat |
30370324 |
T |
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