View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_17 (Length: 414)

Name: NF4115_low_17
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_17
NF4115_low_17
[»] chr1 (9 HSPs)
chr1 (12-400)||(44088448-44088840)
chr1 (26-217)||(44080386-44080574)
chr1 (55-209)||(44068374-44068522)
chr1 (255-363)||(44068260-44068366)
chr1 (255-363)||(44080280-44080386)
chr1 (241-363)||(44088254-44088370)
chr1 (111-191)||(43033400-43033479)
chr1 (13-55)||(26978538-26978580)
chr1 (261-307)||(44053449-44053495)
[»] chr8 (1 HSPs)
chr8 (181-238)||(4616753-4616810)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 44088840 - 44088448
Alignment:
Q  12 agcagagagtaaacagagttttgctgagaacaatagtaataatagtaa----caaccaagttccaacatgaagaattgctggtttctaacaaacaacttc 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088840 agcagagaggaaacagagttttgctgagaacaatagtaataatagtaagtaacaaccaagttccaacatgaagaattgctggtttctaacaaacaacttc 44088741  T
Q  108 cgaaaggaaatgtatttttctaacaccttgtttatatcaggcatagcggcatgccttggtttgttagcgagaattgcatgcaatcacataattgtgagat 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088740 cggaaggaaatgtatttttctaacaccttgtttatatcaggcatagcggcatgccttggtttgttagcgagaattgcatgcaatcacataattgtgagat 44088641  T
Q  208 tcttttgcaatatcaatgccatttatctacactgaaaattttcatttaaacagaaataaagtataaactatgcatagttaaattaagagaaacaatataa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088640 tcttttgcaatatcaatgccatttatctacactgaaaattttcatttaaacagaaataaagtataaactatgcatagttaaattaagagaaacaatataa 44088541  T
Q  308 taaagtatgtcgtaaaccatatcaataagaaaacaagcactttattaaaaagcaatgtatcgcgttaaacaaaaccgaaaaacataatatata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088540 taaagtatgtcgtaaaccatatcaataagaaaacaagcactttattaaaaagcaatgtatcgcgttaaacaaaaccgaaaaacataatatata 44088448  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 44080574 - 44080386
Alignment:
Q  26 agagttttgctgagaacaatagtaataata---gtaacaaccaagttccaacatgaagaattgctggtttctaacaaacaacttccgaaaggaaatgtat 122  Q
    ||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||||| | ||| |||||||    |||| | | ||| || |||    
T  44080574 agagttttgctgagaacaagagtaataataacggtaacaactaagttccaacatgaagaattgttagttcctaacaa----cttctgca-ggatatttat 44080480  T
Q  123 ttttctaacaccttgtttatatcaggcatagcggcatgccttggtttgttagcgagaattgcatgcaatcacataattgtgagattcttttgcaa 217  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||    
T  44080479 ttttctaataccttgtttatatcaggcatagtggcatgccttggtttgttagcgaaaattgcatgcaatcacataa-tgcgagattcatttgcaa 44080386  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 44068522 - 44068374
Alignment:
Q  55 agtaacaaccaagttccaacatgaagaattgctggtttctaacaaacaacttccgaaaggaaatgtatttttctaacaccttgtttatatcaggcatagc 154  Q
    ||||||||| ||||||||||||||||||||| | ||| |||||||    |||| | | ||| || ||||||||||| ||||||||||||||||||||||     
T  44068522 agtaacaactaagttccaacatgaagaattgttagttcctaacaa----cttctgca-ggatatttatttttctaataccttgtttatatcaggcatagt 44068428  T
Q  155 ggcatgccttggtttgttagcgagaattgcatgcaatcacataattgtgagattc 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  44068427 ggcatgccttggtttgttagcgaaaattgcatgcaatcacataa-tgtgagattc 44068374  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 44068366 - 44068260
Alignment:
Q  255 aaacagaaataaagtataaactatgcatagttaaattaagagaaacaatataataaagtatgtcgtaaaccatatcaataagaaaacaag-cactttatt 353  Q
    |||||||||  |||||||||||||||| |||||||| ||||||||||||   |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  44068366 aaacagaaagtaagtataaactatgcacagttaaataaagagaaacaat---ataaagtatgtcgtaaacaatatcaataagaaaacaagccactttatt 44068270  T
Q  354 aaaaagcaat 363  Q
    | ||||||||    
T  44068269 agaaagcaat 44068260  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 44080386 - 44080280
Alignment:
Q  255 aaacagaaataaagtataaactatgcatagttaaattaagagaaacaatataataaagtatgtcgtaaaccatatcaataagaaaacaag-cactttatt 353  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||   |||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  44080386 aaacagaaataaagtattaactatgcatagttaaataaagagaaacaat---ataaagtatgttctaaacaatatcaataagaaaacaagccactttatt 44080290  T
Q  354 aaaaagcaat 363  Q
    | ||||||||    
T  44080289 agaaagcaat 44080280  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 363
Target Start/End: Complemental strand, 44088370 - 44088254
Alignment:
Q  241 gaaaattttcatttaaacagaaataaagtataaactatgcatagttaaattaagagaaacaatataataaagtatgtcgtaaaccatatcaataagaaaa 340  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||      ||||||||||| |||| | |||||||||||||||    
T  44088370 gaaaattttcatttaagcagaa-taaagtataaactatgcacagttaaatcaagagaaac------ataaagtatgtagtaagcaatatcaataagaaaa 44088278  T
Q  341 caa-gcactttattaaaaagcaat 363  Q
    ||| ||||||||||| ||||||||    
T  44088277 caatgcactttattagaaagcaat 44088254  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 43033479 - 43033400
Alignment:
Q  111 aaggaaatgtatttttctaacaccttgtttatatcaggcatagcggcatgccttggtttgttagcgagaattgcatgcaat 191  Q
    ||||||||| || ||||||| |||||||||||||| ||  ||| |||||| ||||||||||||| || | |||||||||||    
T  43033479 aaggaaatgcatctttctaataccttgtttatatctggactagtggcatgtcttggtttgttaggga-acttgcatgcaat 43033400  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26978580 - 26978538
Alignment:
Q  13 gcagagagtaaacagagttttgctgagaacaatagtaataata 55  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||    
T  26978580 gcagagaggaaacagagtttggctgagaacaagagtaataata 26978538  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 44053495 - 44053449
Alignment:
Q  261 aaataaagtataaactatgcatagttaaattaagagaaacaatataa 307  Q
    ||||||||||||||||||| | ||||||||||||||||  |||||||    
T  44053495 aaataaagtataaactatggacagttaaattaagagaactaatataa 44053449  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 4616810 - 4616753
Alignment:
Q  181 ttgcatgcaatcacataattgtgagattcttttgcaatatcaatgccatttatctaca 238  Q
    ||||||||||| | |||| |||||||||||| |||||||| |||||||||| ||||||    
T  4616810 ttgcatgcaattagataactgtgagattcttctgcaatattaatgccatttttctaca 4616753  T

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