View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_19 (Length: 392)
Name: NF4115_low_19
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 30001907 - 30001518
Alignment:
| Q |
1 |
agtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggtttt-ttatagtgtctcaaacccacatatttaagtgacatcatga |
99 |
Q |
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| T |
30001907 |
agtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtgtctcaaacccacatatttaaatgacatcatga |
30001808 |
T |
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| Q |
100 |
atatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattacctcatgttccacatttacaagccaccttgttt |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30001807 |
atatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattacctcatgatccacatttacaagccaccttgttt |
30001708 |
T |
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| Q |
200 |
ttgtctttgcttctttaatagaaaaagttcattttaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaatggaaaacttcc |
299 |
Q |
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| T |
30001707 |
ttgt-tttgcatctttaata-aaaaaaataaaattaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaatggaaaacttcc |
30001610 |
T |
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| Q |
300 |
c---------aacaaagatccactttgttacttgtggaatttgatttcctttagattaggt-----atttaactgtttaatatatgtttatg |
377 |
Q |
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| T |
30001609 |
caacaacaataacaaagatccactttgttacttgtggaatttgatttcctttagattaggtatttaatttaactgtttaatatatgtttatg |
30001518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 22875380 - 22875514
Alignment:
| Q |
257 |
aatccagttttctaaaaagctttcgtg------taaatggaaaacttcccaacaa--------agatccactttgttacttgtggaatttgatttccttt |
342 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
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| T |
22875380 |
aatccagttttctaaagagctttcgtgaccgtgtaaatggaaaacttcccaacaacaataacaagatccactctgttactagtggaatttgatttccttt |
22875479 |
T |
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| Q |
343 |
agattaggtatttaactgtttaatatatgtttatg |
377 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
22875480 |
agattaggtatttaactgtttaatatttgtttatg |
22875514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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