View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_2 (Length: 728)
Name: NF4115_low_2
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_2 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 66 - 714
Target Start/End: Original strand, 36814769 - 36815412
Alignment:
| Q |
66 |
ttgtatctaattttgtcctggtacacaaaaaatttgttagtagttcaacannnnnnngatttgatttgtttcgttgtagttaagaatatttaattacttg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36814769 |
ttgtatctaattttgtcctggtacacaaaaaatttgttagtagttcaacattttttttatttgatttgtttcgttgtagttaagaatatttatttacttg |
36814868 |
T |
|
| Q |
166 |
gctcatcaatcatcatgtcatttttcagtgagaaagttacggttcccaaaaccaaaccaaacataacatttcaaggacaaagctatacttcaactgcaat |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36814869 |
gctcatcaatcatcatgtcatttttcagtgagaaagttacggttcccaaaaccaaaccaaacataacatttcaaggacaaagctatacttcaactgcaat |
36814968 |
T |
|
| Q |
266 |
tgcatggaatgatactgcaaagtctgctaatggcacgttttatagtggctccgttcaagtttttgcctccaatttcattgctaagaacataagcttcatg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36814969 |
tgcatggaatgatactgcaaagtctgctaatggcacgttttatagtggctccgttcaagtttttgcctccaatttcattgctaagaacataagcttcatg |
36815068 |
T |
|
| Q |
366 |
gtgatcaagagnnnnnnnatttatttacatatctctaaaatatataattactcattattgaaagaagataaaattattttacaatatataacacaaatta |
465 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36815069 |
gtgatcaagagtttttttatttatttaaatatctctaaaatatataattactcattattgaaagaagataaaattattttaca--atataacacaaatta |
36815166 |
T |
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| Q |
466 |
ataataattctgtttaactatataattgaaaaagaatttagcaccaattccaattcctggggcagaaggagcacaagccgtagccatgaggatatcagga |
565 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36815167 |
ataataattctgtttaactat---attgaaaaagaatttagcaccaattccaactcctggggcagaaggagcacaagccgtagccatgaggatatcagga |
36815263 |
T |
|
| Q |
566 |
gatcaagctgaatttagaggttgtggattctttggagcccaagatactcttcatgatgataagggtcgtcattacttcaaagattgctatattcaaggat |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36815264 |
gatcaagctgaatttagaggttgtggattctttggagcccaagatactcttcatgatgataagggtcgtcattacttcaaagattgctatattcaaggat |
36815363 |
T |
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| Q |
666 |
ccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36815364 |
ccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
36815412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 709
Target Start/End: Complemental strand, 41574165 - 41574112
Alignment:
| Q |
656 |
attcaaggatccattgattttatatttggcaatgcaaggtcactctatgaggta |
709 |
Q |
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| T |
41574165 |
attcaaggatccattgattttatatttggaaatgctagatcattttatgaggta |
41574112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 714
Target Start/End: Complemental strand, 34132 - 34080
Alignment:
| Q |
660 |
aaggatccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
714 |
Q |
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| T |
34132 |
aaggatccattgatt--atatttggcaatgcaaggtccctctacgaggtatatat |
34080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 714
Target Start/End: Complemental strand, 20028946 - 20028894
Alignment:
| Q |
660 |
aaggatccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
714 |
Q |
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| T |
20028946 |
aaggatccattgatt--atatttggcaatgcaaggtccctctacgaggtatatat |
20028894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 714
Target Start/End: Original strand, 13370682 - 13370734
Alignment:
| Q |
660 |
aaggatccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
714 |
Q |
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| T |
13370682 |
aaggatccattgatt--atatttggcaatgcaaggtccctctacgaggtatatat |
13370734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 714
Target Start/End: Complemental strand, 20513149 - 20513097
Alignment:
| Q |
660 |
aaggatccattgattttatatttggcaatgcaaggtcactctatgaggtatatat |
714 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |
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| T |
20513149 |
aaggatccattgatt--atattcggcaatgcaaggtccctctacgaggtatatat |
20513097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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