View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4115_low_21 (Length: 367)
Name: NF4115_low_21
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 15240044 - 15239885
Alignment:
| Q |
10 |
gacatcatcaatcccaccttgtcttcttcttttgggacaaagatcccaccttgtcttcnnnnnnngggacaaaattaccaccttgtctttaacttggccg |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15240044 |
gacatcataaatcccaccttgtcttcttcttttgggacaaagatcccaccttgtcttctttttttgggacaaaattcccaccttgtctttaacttggccg |
15239945 |
T |
|
| Q |
110 |
gaattttcctagtaacacttgattttgataagaggtgtcattgataaatttctgatttgg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
15239944 |
gaattttcctagtaacacttgattttgataagaggcgtcattgataaatttctggtttgg |
15239885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 216 - 349
Target Start/End: Complemental strand, 15239692 - 15239562
Alignment:
| Q |
216 |
tatactccaatgaagaacccaaatcaaaatagataagcacgggtctcattcacaaaattttcttttttatttacatacaattttgagggatatgtaatgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
15239692 |
tatactccaatgaagaacccaaatcaaaatagataagcacgggtctcattcaaaaaaaaaaaatt---atttacatacaattttgagggatatgtaatgt |
15239596 |
T |
|
| Q |
316 |
ttctcaattggaccactttgaagataatcatact |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15239595 |
ttctcaattggaccactttgaagataatcatact |
15239562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 24069981 - 24070053
Alignment:
| Q |
271 |
aattttcttttttatttacatacaattttgagggatatgtaatgtttctcaattggaccactttgaagataat |
343 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||| ||| ||| | | | | ||||||||||||| |
|
|
| T |
24069981 |
aattttctttcttatttacatacaattttgaggcatatgtaatttttgtcattagtaactctttgaagataat |
24070053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 36007832 - 36007874
Alignment:
| Q |
271 |
aattttcttttttatttacatacaattttgagggatatgtaat |
313 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
36007832 |
aattttctttctcatttacatacaattttgagggatatgtaat |
36007874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University