View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_23 (Length: 363)
Name: NF4115_low_23
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 30928732 - 30928386
Alignment:
| Q |
17 |
accatctacatgaatctatccctatgcattatttccttcattattagattataaccggacttaaccgaataacaactgtcacggtcctccacccaaaaat |
116 |
Q |
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| T |
30928732 |
accatctacatgaatctatcgctatgcattatttccttcattattagattataaccggacttaaccgaataacaactgtcacggtcctccacccaaaaat |
30928633 |
T |
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| Q |
117 |
cagtaagaagcgacacagagaatgcggagaaacagaactgaagtataaggctcttttaaagaattcatattaattaaaacactgatcccatcaccgatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
30928632 |
cagtaagaagcgacacagagaatgcggagaaacagaactgaagtataaggctcttttaaagaattcatattaattaaaacactgataccatcaccaatag |
30928533 |
T |
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| Q |
217 |
agtttaaatattattgggattcgttgcgatcatcaacgaaatgcattcacgcttcagctcatagatgacggttaaattcgagatcagaaaaaaccaaata |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30928532 |
agtttatatattattgggattcgttgcgatcatcaacgaaatgcattcacgcttcagttcatagatgacggttaaattcgagatcagaaaaaaccaaata |
30928433 |
T |
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| Q |
317 |
tactttttggggaatctattactatattctctgtgtcacctcttttg |
363 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30928432 |
taatttttggggaatctattactatattctctgtgtcacctcttttg |
30928386 |
T |
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