View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_25 (Length: 359)
Name: NF4115_low_25
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 42 - 338
Target Start/End: Complemental strand, 4647495 - 4647199
Alignment:
| Q |
42 |
atgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctccaggaggaaggaatcaaattgaaagagttaatctttca |
141 |
Q |
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| T |
4647495 |
atgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttca |
4647396 |
T |
|
| Q |
142 |
atcaagcttcaatgattattccaaaattaatatcatgcgcggaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaa |
241 |
Q |
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| T |
4647395 |
atcaagcttcaacgattattccaaaattgatatcatgcgggaaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaa |
4647296 |
T |
|
| Q |
242 |
ttgttgcaaagaaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcc |
338 |
Q |
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| T |
4647295 |
ttgttgcaaagaaatgcaagacacgcggctgcaagctactggtgaggaccaaactcgcatgtttgagctaaggaaacgcttgcaacggctgatgtcc |
4647199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
| Q |
93 |
tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc |
151 |
Q |
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| T |
4630838 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc |
4630780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 4846225 - 4846265
Alignment:
| Q |
119 |
aaattgaaagagttaatctttcaatcaagcttcaatgatta |
159 |
Q |
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| T |
4846225 |
aaattgaaagagttaatctttcaatcaagcttcaacgatta |
4846265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 4636750 - 4636708
Alignment:
| Q |
117 |
tcaaattgaaagagttaatctttcaatcaagcttcaatgatta |
159 |
Q |
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| T |
4636750 |
tcaaattgaaagagtttatctttcaatcaagcttcaacgatta |
4636708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
| Q |
117 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
153 |
Q |
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| T |
4661685 |
tcaaattgaaagagttgatctttcaatcaagcttcaa |
4661649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
| Q |
117 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
153 |
Q |
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|
| T |
4666822 |
tcaaattgaaagagttaatctttcaattaagcttcaa |
4666786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
| Q |
93 |
tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa |
153 |
Q |
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||||||||||| || |||||| |||||||||||||||||||||||| || ||||||||| |
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| T |
4672587 |
tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa |
4672527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
| Q |
108 |
aggaaggaatcaaattgaaagagttaatctttcaatcaagct |
149 |
Q |
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|||||| | |||||||||||||||||||||| |||||||||| |
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| T |
4653416 |
aggaagcactcaaattgaaagagttaatcttacaatcaagct |
4653375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 4643558 - 4643522
Alignment:
| Q |
117 |
tcaaattgaaagagttaatctttcaatcaagcttcaa |
153 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
4643558 |
tcaacttgaaagagctaatctttcaatcaagcttcaa |
4643522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 4697398 - 4697430
Alignment:
| Q |
117 |
tcaaattgaaagagttaatctttcaatcaagct |
149 |
Q |
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| T |
4697398 |
tcaaattgaaagacttaatctttcaatcaagct |
4697430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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