View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_30 (Length: 349)
Name: NF4115_low_30
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 35205284 - 35205462
Alignment:
| Q |
1 |
gacttatgttggacaagagagtgaaacaacaaaacacgtgacacaaggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggtatag |
100 |
Q |
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| T |
35205284 |
gacttatgttggacaagagagtgaaacaacaaaacacgtgacacagggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggtatag |
35205383 |
T |
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| Q |
101 |
aaataaaataactcacataatcgccatggccgggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
183 |
Q |
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| T |
35205384 |
aaataaaataactcacataatcgccat----gggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
35205462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 35206010 - 35206149
Alignment:
| Q |
191 |
catgataaaaacaaaaggagttcctcagcacacaaacacttggtgttacatatgccaccttcttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
290 |
Q |
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| T |
35206010 |
catgataaaaacaaaaggagttcctcagcacacaaatacttggtgttacatatgccacctacttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
35206109 |
T |
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| Q |
291 |
cgtacctagatcaagcgaaataatcccgaattgataaaca |
330 |
Q |
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| T |
35206110 |
cgtacctagatcaagcgaaataatcccgaattgataaaca |
35206149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 20456485 - 20456362
Alignment:
| Q |
192 |
atgataaaaacaaaaggagttcctcagcacacaaacacttggtgttacatatgccaccttcttcgaattcaaagggggcatcaactgtgtgtgcgtctcc |
291 |
Q |
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| T |
20456485 |
atgataaaaacaaaaggagttcatcaacacacaaacacttgcatatgcacatgacaccttctcacaacttggagggggcatcaactttgtgtatgtctca |
20456386 |
T |
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| Q |
292 |
gtacctagatcaagcgaaataatc |
315 |
Q |
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| T |
20456385 |
gtacctagatcaagggaaacaatc |
20456362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 20414790 - 20414739
Alignment:
| Q |
264 |
agggggcatcaactgtgtgtgcgtctccgtacctagatcaagcgaaataatc |
315 |
Q |
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| T |
20414790 |
agggggcatcaactgtgtgtatgtctcagtacttagatcaagcgaaacaatc |
20414739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 7306188 - 7306224
Alignment:
| Q |
138 |
acttgaattggtttgatcagaccaagaagaatattca |
174 |
Q |
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| T |
7306188 |
acttgaattggtgtgatcagagcaagaagaatattca |
7306224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 21218796 - 21218832
Alignment:
| Q |
193 |
tgataaaaacaaaaggagttcctcagcacacaaacac |
229 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |
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| T |
21218796 |
tgataaaaacaaaaggagttcatcaacacacaaacac |
21218832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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